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csbdeep

Image restoration for fluorescence microscopy

custom_malis

Malis C++ implementation with accessible custom neighborhoods

dalle-mini-poster

Create posters from dalle-mini / craiyon screenshots

deep-cell

deep-holodeck

Lightweight dashbord for monitoring deep learning experiments.

deep-micro-val

Evaluating segmentation methods for common cell segmentation problems

deepdream

defect_svm

Kernel SVM for defect detection in TEM data.

densereconstruction

dl-teaching-resources

Collection of teaching material for deep learning for (biomedical) image analysis

docs

Documentation for napari (other than API docs)

elf

Utils and convenience functions for large-scale bio-image analysis.

escargot

Graph algorithms in c++ and python

fastfilters

fast gaussian and derivative convolutional filters

fastpy

Turorial on speeding up python for image processing

glasbey

Generate maximally distinct sets of colors

gpu_benchmarks

graph

Graphs and Graph Algorithms in C++, including Minimum Cost (Lifted) Multicuts

gunpowder

Data loading DAG for Greentea.

gunpowder-experiments

h3x

Automagic code refactor

hdf-n5-converter

converter for turning labeled hdf5 data into n5 label dataset

heimdall

Python based viewer for large mulit-dimensional datasets.

i2k-2020-s3-zarr-workshop

ilastik

ilastik-shell, applets, and workflows to string them together.

image-processing

imagej-utils

imagepy-feedstock

A conda-smithy repository for imagepy.

inferno

A utility library around PyTorch

inferno-experiments