conda create -y -n r-brd-env --copy r-sparklyr r-essentials r-changepoint r-zoo r-dplyr r-aws.s3 r-mixtools r-timedate r-data.table r-h2o r-tidyr r-rcpproll r-lubridate r-foreach r-domc conda-pack -c conda-forge
conda activate r-brd-env
conda-pack -o r_env.zip -d ./r_env.zip/
Collecting packages...
Packing environment at '/home/centos/miniconda/envs/r-brd-env' to 'r_env.zip'
[############ ] | 32% Completed | 1min 4.3s
Traceback (most recent call last):
File "/home/centos/miniconda/envs/r-brd-env/lib/python3.8/site-packages/conda_pack/cli.py", line 135, in main
pack(name=args.name,
File "/home/centos/miniconda/envs/r-brd-env/lib/python3.8/site-packages/conda_pack/core.py", line 462, in pack
return env.pack(output=output, format=format, arcroot=arcroot,
File "/home/centos/miniconda/envs/r-brd-env/lib/python3.8/site-packages/conda_pack/core.py", line 333, in pack
packer.add(f)
File "/home/centos/miniconda/envs/r-brd-env/lib/python3.8/site-packages/conda_pack/core.py", line 929, in add
self.archive.add(file.source, file.target)
File "/home/centos/miniconda/envs/r-brd-env/lib/python3.8/site-packages/conda_pack/formats.py", line 207, in add
self._add(source, target)
File "/home/centos/miniconda/envs/r-brd-env/lib/python3.8/site-packages/conda_pack/formats.py", line 291, in _add
self.archive.write(source, target)
File "/home/centos/miniconda/envs/r-brd-env/lib/python3.8/zipfile.py", line 1722, in write
zinfo = ZipInfo.from_file(filename, arcname,
File "/home/centos/miniconda/envs/r-brd-env/lib/python3.8/zipfile.py", line 509, in from_file
st = os.stat(filename)
FileNotFoundError: [Errno 2] No such file or directory: '/home/centos/miniconda/pkgs/libblas-3.8.0-14_openblas/lib/libblas.so'
# packages in environment at /home/centos/miniconda/envs/r-brd-env:
#
# Name Version Build Channel
_libgcc_mutex 0.1 main defaults
_r-mutex 1.0.1 anacondar_1 conda-forge
attrs 19.3.0 py_0 conda-forge
backcall 0.1.0 py_0 conda-forge
binutils_impl_linux-64 2.31.1 h7fc9f1b_2 conda-forge
binutils_linux-64 2.31.1 h6176602_12 conda-forge
bleach 3.1.0 py_0 conda-forge
bwidget 1.9.13 0 conda-forge
bzip2 1.0.8 h516909a_1 conda-forge
ca-certificates 2019.9.11 hecc5488_0 conda-forge
cairo 1.16.0 hfb77d84_1002 conda-forge
certifi 2019.9.11 py38_0 conda-forge
conda-pack 0.4.0 py_0 conda-forge
curl 7.65.3 hf8cf82a_0 conda-forge
decorator 4.4.1 py_0 conda-forge
defusedxml 0.6.0 py_0 conda-forge
entrypoints 0.3 py38_1000 conda-forge
fontconfig 2.13.1 h86ecdb6_1001 conda-forge
freetype 2.10.0 he983fc9_1 conda-forge
fribidi 1.0.5 h516909a_1002 conda-forge
gcc_impl_linux-64 7.3.0 habb00fd_2 conda-forge
gcc_linux-64 7.3.0 h553295d_12 conda-forge
gettext 0.19.8.1 hc5be6a0_1002 conda-forge
gfortran_impl_linux-64 7.3.0 hdf63c60_2 conda-forge
gfortran_linux-64 7.3.0 h553295d_12 conda-forge
glib 2.58.3 py38h6f030ca_1002 conda-forge
graphite2 1.3.13 hf484d3e_1000 conda-forge
gsl 2.5 h294904e_1 conda-forge
gxx_impl_linux-64 7.3.0 hdf63c60_2 conda-forge
gxx_linux-64 7.3.0 h553295d_12 conda-forge
harfbuzz 2.4.0 h9f30f68_3 conda-forge
icu 64.2 he1b5a44_1 conda-forge
importlib_metadata 0.23 py38_0 conda-forge
ipykernel 5.1.3 py38h5ca1d4c_0 conda-forge
ipython 7.9.0 py38h5ca1d4c_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
jedi 0.15.1 py38_0 conda-forge
jinja2 2.10.3 py_0 conda-forge
jpeg 9c h14c3975_1001 conda-forge
jsonschema 3.1.1 py38_0 conda-forge
jupyter_client 5.3.3 py38_1 conda-forge
jupyter_core 4.5.0 py_0 conda-forge
krb5 1.16.3 h05b26f9_1001 conda-forge
libblas 3.8.0 14_openblas conda-forge
libcblas 3.8.0 14_openblas conda-forge
libcurl 7.65.3 hda55be3_0 conda-forge
libedit 3.1.20170329 hf8c457e_1001 conda-forge
libffi 3.2.1 he1b5a44_1006 conda-forge
libgcc-ng 9.1.0 hdf63c60_0 defaults
libgfortran-ng 7.3.0 hdf63c60_2 conda-forge
libiconv 1.15 h516909a_1005 conda-forge
liblapack 3.8.0 14_openblas conda-forge
libopenblas 0.3.7 h6e990d7_3 conda-forge
libpng 1.6.37 hed695b0_0 conda-forge
libsodium 1.0.17 h516909a_0 conda-forge
libssh2 1.8.2 h22169c7_2 conda-forge
libstdcxx-ng 9.1.0 hdf63c60_0 defaults
libtiff 4.1.0 hfc65ed5_0 conda-forge
libuuid 2.32.1 h14c3975_1000 conda-forge
libxcb 1.13 h14c3975_1002 conda-forge
libxml2 2.9.10 hee79883_0 conda-forge
lz4-c 1.8.3 he1b5a44_1001 conda-forge
make 4.2.1 h14c3975_2004 conda-forge
markupsafe 1.1.1 py38h516909a_0 conda-forge
mistune 0.8.4 py38h516909a_1000 conda-forge
more-itertools 7.2.0 py_0 conda-forge
nbconvert 5.6.1 py38_0 conda-forge
nbformat 4.4.0 py_1 conda-forge
ncurses 6.1 hf484d3e_1002 conda-forge
notebook 6.0.1 py38_0 conda-forge
openssl 1.1.1d h516909a_0 conda-forge
pandoc 2.7.3 0 conda-forge
pandocfilters 1.4.2 py_1 conda-forge
pango 1.42.4 ha030887_1 conda-forge
parso 0.5.1 py_0 conda-forge
pcre 8.43 he1b5a44_0 conda-forge
pexpect 4.7.0 py38_0 conda-forge
pickleshare 0.7.5 py38_1000 conda-forge
pip 19.3.1 py38_0 conda-forge
pixman 0.38.0 h516909a_1003 conda-forge
prometheus_client 0.7.1 py_0 conda-forge
prompt_toolkit 2.0.10 py_0 conda-forge
pthread-stubs 0.4 h14c3975_1001 conda-forge
ptyprocess 0.6.0 py_1001 conda-forge
pygments 2.4.2 py_0 conda-forge
pyrsistent 0.15.5 py38h516909a_0 conda-forge
python 3.8.0 h357f687_3 conda-forge
python-dateutil 2.8.1 py_0 conda-forge
pyzmq 18.1.1 py38h1768529_0 conda-forge
r-askpass 1.1 r36hcdcec82_1 conda-forge
r-assertthat 0.2.1 r36h6115d3f_1 conda-forge
r-aws.s3 0.3.20 r36h6115d3f_1002 conda-forge
r-aws.signature 0.5.2 r36h6115d3f_0 conda-forge
r-backports 1.1.5 r36hcdcec82_0 conda-forge
r-base 3.6.1 hba50c9b_5 conda-forge
r-base64enc 0.1_3 r36hcdcec82_1003 conda-forge
r-bitops 1.0_6 r36hcdcec82_1003 conda-forge
r-boot 1.3_23 r36h6115d3f_2 conda-forge
r-broom 0.5.2 r36h6115d3f_1 conda-forge
r-callr 3.3.2 r36h6115d3f_0 conda-forge
r-caret 6.0_84 r36hcdcec82_1 conda-forge
r-cellranger 1.1.0 r36h6115d3f_1002 conda-forge
r-changepoint 2.2.2 r36h516909a_1003 conda-forge
r-class 7.3_15 r36hcdcec82_1001 conda-forge
r-cli 1.1.0 r36h6115d3f_2 conda-forge
r-clipr 0.7.0 r36h6115d3f_0 conda-forge
r-cluster 2.1.0 r36h9bbef5b_2 conda-forge
r-codetools 0.2_16 r36h6115d3f_1001 conda-forge
r-colorspace 1.4_1 r36hcdcec82_1 conda-forge
r-config 0.3 r36h6115d3f_1002 conda-forge
r-crayon 1.3.4 r36h6115d3f_1002 conda-forge
r-curl 4.2 r36hcdcec82_0 conda-forge
r-data.table 1.12.6 r36hcdcec82_0 conda-forge
r-dbi 1.0.0 r36h6115d3f_1002 conda-forge
r-dbplyr 1.4.2 r36h6115d3f_1 conda-forge
r-digest 0.6.22 r36h0357c0b_0 conda-forge
r-domc 1.3.6 r36_0 conda-forge
r-dplyr 0.8.3 r36h0357c0b_3 conda-forge
r-ellipsis 0.3.0 r36hcdcec82_0 conda-forge
r-essentials 3.6 r36_2001 conda-forge
r-evaluate 0.14 r36h6115d3f_1 conda-forge
r-fansi 0.4.0 r36hcdcec82_1001 conda-forge
r-fastmap 1.0.1 r36h0357c0b_0 conda-forge
r-forcats 0.4.0 r36h6115d3f_1 conda-forge
r-foreach 1.4.7 r36h6115d3f_0 conda-forge
r-foreign 0.8_72 r36hcdcec82_0 conda-forge
r-forge 0.2.0 r36h6115d3f_1 conda-forge
r-formatr 1.7 r36h6115d3f_1 conda-forge
r-fs 1.3.1 r36h0357c0b_1 conda-forge
r-generics 0.0.2 r36h6115d3f_1002 conda-forge
r-ggplot2 3.2.1 r36h6115d3f_0 conda-forge
r-gistr 0.4.2 r36h6115d3f_1002 conda-forge
r-glmnet 2.0_18 r36h9bbef5b_2 conda-forge
r-glue 1.3.1 r36hcdcec82_1 conda-forge
r-gower 0.2.1 r36hcdcec82_1 conda-forge
r-gtable 0.3.0 r36h6115d3f_2 conda-forge
r-h2o 3.26.0.2 r36h6115d3f_0 defaults
r-haven 2.2.0 r36hde08347_0 conda-forge
r-hexbin 1.28.0 r36h9bbef5b_0 conda-forge
r-highr 0.8 r36h6115d3f_1 conda-forge
r-hms 0.5.2 r36h6115d3f_0 conda-forge
r-htmltools 0.4.0 r36h0357c0b_0 conda-forge
r-htmlwidgets 1.5.1 r36h6115d3f_0 conda-forge
r-httpuv 1.5.2 r36h0357c0b_1 conda-forge
r-httr 1.4.1 r36h6115d3f_1 conda-forge
r-ipred 0.9_9 r36hcdcec82_1 conda-forge
r-irdisplay 0.7 r36_1001 conda-forge
r-irkernel 1.0.2 r36h6115d3f_2 conda-forge
r-iterators 1.0.12 r36h6115d3f_0 conda-forge
r-jsonlite 1.6 r36hcdcec82_1001 conda-forge
r-kernsmooth 2.23_15 r36h9bbef5b_1004 conda-forge
r-knitr 1.26 r36h6115d3f_0 conda-forge
r-labeling 0.3 r36h6115d3f_1002 conda-forge
r-later 1.0.0 r36h0357c0b_0 conda-forge
r-lattice 0.20_38 r36hcdcec82_1002 conda-forge
r-lava 1.6.6 r36h6115d3f_0 conda-forge
r-lazyeval 0.2.2 r36hcdcec82_1 conda-forge
r-lifecycle 0.1.0 r36h6115d3f_0 conda-forge
r-lubridate 1.7.4 r36h0357c0b_1002 conda-forge
r-magrittr 1.5 r36h6115d3f_1002 conda-forge
r-maps 3.3.0 r36hcdcec82_1003 conda-forge
r-markdown 1.1 r36hcdcec82_0 conda-forge
r-mass 7.3_51.4 r36hcdcec82_1 conda-forge
r-matrix 1.2_17 r36hcdcec82_1 conda-forge
r-mgcv 1.8_29 r36hcdcec82_0 conda-forge
r-mime 0.7 r36hcdcec82_1 conda-forge
r-mixtools 1.1.0 r36hcdcec82_1003 conda-forge
r-modelmetrics 1.2.2 r36h0357c0b_1 conda-forge
r-modelr 0.1.5 r36h6115d3f_0 conda-forge
r-munsell 0.5.0 r36h6115d3f_1002 conda-forge
r-nlme 3.1_141 r36h9bbef5b_1 conda-forge
r-nnet 7.3_12 r36hcdcec82_1003 conda-forge
r-numderiv 2016.8_1.1 r36h6115d3f_1 conda-forge
r-openssl 1.4.1 r36h9c8475f_0 conda-forge
r-pbdzmq 0.3_3 r36h559a7a4_1002 conda-forge
r-pillar 1.4.2 r36h6115d3f_2 conda-forge
r-pkgconfig 2.0.3 r36h6115d3f_0 conda-forge
r-plogr 0.2.0 r36h6115d3f_1002 conda-forge
r-plyr 1.8.4 r36h0357c0b_1003 conda-forge
r-prettyunits 1.0.2 r36h6115d3f_1002 conda-forge
r-processx 3.4.1 r36hcdcec82_0 conda-forge
r-prodlim 2019.10.13 r36h0357c0b_0 conda-forge
r-progress 1.2.2 r36h6115d3f_1 conda-forge
r-promises 1.1.0 r36h0357c0b_0 conda-forge
r-pryr 0.1.4 r36h0357c0b_1003 conda-forge
r-ps 1.3.0 r36hcdcec82_1001 conda-forge
r-purrr 0.3.3 r36hcdcec82_0 conda-forge
r-quantmod 0.4_15 r36h6115d3f_1 conda-forge
r-r2d3 0.2.3 r36h6115d3f_1001 conda-forge
r-r6 2.4.1 r36h6115d3f_0 conda-forge
r-randomforest 4.6_14 r36h9bbef5b_1002 conda-forge
r-rappdirs 0.3.1 r36hcdcec82_1003 conda-forge
r-rbokeh 0.5.0 r36h6115d3f_1002 conda-forge
r-rcolorbrewer 1.1_2 r36h6115d3f_1002 conda-forge
r-rcpp 1.0.3 r36h0357c0b_0 conda-forge
r-rcpproll 0.3.0 r36h0357c0b_1001 conda-forge
r-rcurl 1.95_4.12 r36hcdcec82_1 conda-forge
r-readr 1.3.1 r36h0357c0b_1002 conda-forge
r-readxl 1.3.1 r36h0357c0b_2 conda-forge
r-recipes 0.1.7 r36h6115d3f_0 conda-forge
r-recommended 3.6 r36_1003 conda-forge
r-rematch 1.0.1 r36h6115d3f_1002 conda-forge
r-repr 1.0.1 r36h6115d3f_1 conda-forge
r-reprex 0.3.0 r36h6115d3f_1 conda-forge
r-reshape2 1.4.3 r36h0357c0b_1004 conda-forge
r-rlang 0.4.1 r36hcdcec82_0 conda-forge
r-rmarkdown 1.17 r36h6115d3f_0 conda-forge
r-rpart 4.1_15 r36hcdcec82_1 conda-forge
r-rprojroot 1.3_2 r36h6115d3f_1002 conda-forge
r-rstudioapi 0.10 r36h6115d3f_2 conda-forge
r-rvest 0.3.5 r36h6115d3f_0 conda-forge
r-scales 1.0.0 r36h0357c0b_1002 conda-forge
r-segmented 1.0_0 r36h6115d3f_1 conda-forge
r-selectr 0.4_1 r36h6115d3f_1001 conda-forge
r-shiny 1.4.0 r36h6115d3f_0 conda-forge
r-sourcetools 0.1.7 r36he1b5a44_1001 conda-forge
r-sparklyr 1.0.4 r36h6115d3f_0 conda-forge
r-spatial 7.3_11 r36hcdcec82_1003 conda-forge
r-squarem 2017.10_1 r36h6115d3f_1002 conda-forge
r-stringi 1.4.3 r36h0e574ca_3 conda-forge
r-stringr 1.4.0 r36h6115d3f_1 conda-forge
r-survival 2.44_1.1 r36hcdcec82_1 conda-forge
r-sys 3.3 r36hcdcec82_0 conda-forge
r-tibble 2.1.3 r36hcdcec82_1 conda-forge
r-tidyr 1.0.0 r36h0357c0b_0 conda-forge
r-tidyselect 0.2.5 r36h0357c0b_1001 conda-forge
r-tidyverse 1.2.1 r36h6115d3f_1002 conda-forge
r-timedate 3043.102 r36h6115d3f_1001 conda-forge
r-tinytex 0.17 r36h6115d3f_0 conda-forge
r-ttr 0.23_5 r36hcdcec82_0 conda-forge
r-utf8 1.1.4 r36hcdcec82_1001 conda-forge
r-uuid 0.1_2 r36hcdcec82_1002 conda-forge
r-vctrs 0.2.0 r36hcdcec82_1 conda-forge
r-viridislite 0.3.0 r36h6115d3f_1002 conda-forge
r-whisker 0.4 r36h6115d3f_0 conda-forge
r-withr 2.1.2 r36h6115d3f_1001 conda-forge
r-xfun 0.11 r36h6115d3f_0 conda-forge
r-xml2 1.2.2 r36h0357c0b_0 conda-forge
r-xtable 1.8_4 r36h6115d3f_2 conda-forge
r-xts 0.11_2 r36hcdcec82_1 conda-forge
r-yaml 2.2.0 r36hcdcec82_1002 conda-forge
r-zeallot 0.1.0 r36h6115d3f_1001 conda-forge
r-zoo 1.8_6 r36hcdcec82_1 conda-forge
readline 8.0 hf8c457e_0 conda-forge
sed 4.7 h1bed415_1000 conda-forge
send2trash 1.5.0 py_0 conda-forge
setuptools 41.6.0 py38_1 conda-forge
six 1.13.0 py38_0 conda-forge
sqlite 3.30.1 hcee41ef_0 conda-forge
terminado 0.8.3 py38_0 conda-forge
testpath 0.4.4 py_0 conda-forge
tk 8.6.9 hed695b0_1003 conda-forge
tktable 2.10 h555a92e_3 conda-forge
tornado 6.0.3 py38h516909a_0 conda-forge
traitlets 4.3.3 py38_0 conda-forge
wcwidth 0.1.7 py_1 conda-forge
webencodings 0.5.1 py_1 conda-forge
wheel 0.33.6 py38_0 conda-forge
xorg-kbproto 1.0.7 h14c3975_1002 conda-forge
xorg-libice 1.0.10 h516909a_0 conda-forge
xorg-libsm 1.2.3 h84519dc_1000 conda-forge
xorg-libx11 1.6.9 h516909a_0 conda-forge
xorg-libxau 1.0.9 h14c3975_0 conda-forge
xorg-libxdmcp 1.1.3 h516909a_0 conda-forge
xorg-libxext 1.3.4 h516909a_0 conda-forge
xorg-libxrender 0.9.10 h516909a_1002 conda-forge
xorg-renderproto 0.11.1 h14c3975_1002 conda-forge
xorg-xextproto 7.3.0 h14c3975_1002 conda-forge
xorg-xproto 7.0.31 h14c3975_1007 conda-forge
xz 5.2.4 h14c3975_1001 conda-forge
zeromq 4.3.2 he1b5a44_2 conda-forge
zipp 0.6.0 py_0 conda-forge
zlib 1.2.11 h516909a_1006 conda-forge
zstd 1.4.3 h3b9ef0a_0 conda-forge
Not sure how to debug or resolve this. Any suggestions?