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I faced with the following error when comparing two large mammalian genomes:
Warning: file (null) was not deleted.
the command was:
./SMASH pseudo_dog10.fa pseudo_cat10.fa
do you have any idea about this error and how can I handle such analysis using smash?
Thanks.

Hello,

When I try to download the sequences on my command line, I keep getting the following message: "No such directory ‘genomes/H_sapiens/Assembled_chromosomes/seq’."

Is there resolution to this?

Thank you,
Dua

Hi, the output svg does not seem to have labels associated with the drawings. Is there a way to know which drawing belongs to the ref or query?