Coder Social home page Coder Social logo

designmc's People

Contributors

cdanielmachado avatar

Stargazers

avatar avatar avatar avatar avatar

Watchers

avatar

Forkers

arshah18 arianccbasile syssynbio

designmc's Issues

cannot import 'SteadierCom'

Hi Daniel,

I am keen to try DesignMC but when I want to check the documentation designmc -h I get the following error about 'SteadierCom' from reframed:

designmc -h
Traceback (most recent call last):
  File "/opt/anaconda3/envs/metabolic/bin/designmc", line 5, in <module>
    from designmc.cli import main
  File "/opt/anaconda3/envs/metabolic/lib/python3.8/site-packages/designmc/__init__.py", line 7, in <module>
    from .designmc import design
  File "/opt/anaconda3/envs/metabolic/lib/python3.8/site-packages/designmc/designmc.py", line 2, in <module>
    from reframed import Community, SteadierCom, FBA
ImportError: cannot import name 'SteadierCom' from 'reframed' (/opt/anaconda3/envs/metabolic/lib/python3.8/site-packages/reframed/__init__.py)

The dependencies look fine to me:

Requirement already satisfied: designmc in /opt/anaconda3/envs/metabolic/lib/python3.8/site-packages (0.1.0)
Requirement already satisfied: pandas in /opt/anaconda3/envs/metabolic/lib/python3.8/site-packages (from designmc) (1.4.3)
Requirement already satisfied: reframed in /opt/anaconda3/envs/metabolic/lib/python3.8/site-packages (from designmc) (1.2.1)
Requirement already satisfied: python-dateutil>=2.8.1 in /opt/anaconda3/envs/metabolic/lib/python3.8/site-packages (from pandas->designmc) (2.8.2)
Requirement already satisfied: numpy>=1.18.5 in /opt/anaconda3/envs/metabolic/lib/python3.8/site-packages (from pandas->designmc) (1.23.1)
Requirement already satisfied: pytz>=2020.1 in /opt/anaconda3/envs/metabolic/lib/python3.8/site-packages (from pandas->designmc) (2022.1)
Requirement already satisfied: scipy in /opt/anaconda3/envs/metabolic/lib/python3.8/site-packages (from reframed->designmc) (1.9.0)
Requirement already satisfied: sympy in /opt/anaconda3/envs/metabolic/lib/python3.8/site-packages (from reframed->designmc) (1.10.1)
Requirement already satisfied: python-libsbml in /opt/anaconda3/envs/metabolic/lib/python3.8/site-packages (from reframed->designmc) (5.19.6)
Requirement already satisfied: six>=1.5 in /opt/anaconda3/envs/metabolic/lib/python3.8/site-packages (from python-dateutil>=2.8.1->pandas->designmc) (1.16.0)
Requirement already satisfied: mpmath>=0.19 in /opt/anaconda3/envs/metabolic/lib/python3.8/site-packages (from sympy->reframed->designmc) (1.2.1)

I hope you can have a look at it or maybe give me some directions on how to fix it. Thank you for your help.

Cheers,
Rudolf

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.