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algorithms

Minimal examples of data structures and algorithms in Python

arshah18.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

biomass_formulation

brain-image-segmentation-and-tumor-detection-using-deep-learning

Smart India Hackathon -2019 Finalist

camicroscope

Digital pathology image viewer with support for human/machine generated annotations and markups.

carveme

CarveMe: genome-scale metabolic model reconstruction

cbioportal-frontend

React Frontend of cBioPortal :tada:

celfie

cfDNA cell type of origin estimation

clonevol

Inferring and visualizing clonal evolution in multi-sample cancer sequencing

cruk-bioinf-sschool

http://bioinformatics-core-shared-training.github.io/cruk-bioinf-sschool

deeplearningbook-notes

Notes on the Deep Learning book from Ian Goodfellow, Yoshua Bengio and Aaron Courville (2016)

designmc

Designing microbial communities

dge_workshop

diamond

Accelerated BLAST compatible local sequence aligner.

earlyplacentarnaseqprofile

Early to mid gestation RNA-seq analysis for (Breen et al. 2020)

framed

framed: a metabolic modeling package for python

hpc_resources

human-gem

The generic genome-scale metabolic model of Homo sapiens

iarc-nf

List of IARC bioinformatics nextflow pipelines

idep

Integrated Differential Expression and Pathway analysis

in-depth-ngs-data-analysis-course

learnml

This is the Study Guide for Learn Machine Learning in 3 Months (PyTorch Curriculum) by Siraj Raval on Youtube

light-limitation-paper

microbiome

miracum-cbioportal

cBioPortal is a data visualization tool for cancer genomics. This repository contains all components to deploy the customized version of cBioPortal used in the Use Case 3 of MIRACUM in the Medical Informatics Initiative Germany.

mutational-burden-and-ccrcc-mortality

Repository with the whole code of our pipeline used in the analysis of mortality in metastatic clear cell kidney cancer carcinoma

nf-core

Curated set of analysis pipelines built using Nextflow

ngi-rnaseq

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

ngs_resources

pubmed.miner

:exclamation: This is a read-only mirror of the CRAN R package repository. pubmed.mineR — Text Mining of PubMed Abstracts