ccbaumler / colton

About

Focused on bioinformatically deriving biomedical-relevant answers from public data in the population health field. I find some purpose in helping and mentoring others. Broadly, I aim to eloquently teaching topics that are esoteric and under-taught.

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Current projects

1. Discovery and re-discovery of genomic and metabolomic biomarkers in case verse control studies.
2. Teaching inclusive, equitable, and sustainable practices in scholarly knowledge management

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Github Statistics

My latest open-source contributions:

1. 🗣 Commented on #3183 in sourmash-bio/sourmash
2. 🗣 Commented on #3191 in sourmash-bio/sourmash
3. 🗣 Commented on #3191 in sourmash-bio/sourmash
4. ❗ Opened issue #3191 in sourmash-bio/sourmash
5. 🗣 Commented on #3190 in sourmash-bio/sourmash

colton's Issues

Using mermaid in HackMD and Github for diagrams and mindmapping

A live editor

This live editor may be used to create the script for the diagram that I would like to create. It will render the diagram and allow for the creation of this diagrams much easier than some others liek HackMD (which is not up-to-date with current versions i.e. doesn't have mindmap yet).

For tutorial and information review

https://github.blog/2022-02-14-include-diagrams-markdown-files-mermaid/

https://mermaid.js.org/config/Tutorials.html

https://docs.github.com/en/get-started/writing-on-github/working-with-advanced-formatting/creating-diagrams#creating-mermaid-diagrams
https://github.com/mermaid-js/mermaid/blob/develop/packages/mermaid/src/docs/syntax/mindmap.md
https://raw.githubusercontent.com/mermaid-js/mermaid/develop/packages/mermaid/src/docs/syntax/mindmap.md

mindmap
  root((mindmap))
    Origins
      Long history
      ::icon(fa fa-book)
      Popularisation
        British popular psychology author Tony Buzan
    Research
      On effectivness<br/>and features
      On Automatic creation
        Uses
          Creative techniques
          Strategic planning
          Arguement mapping
    Tools
      Pen and paper
      Mermaid
      Other digital methods?

mindmap
Root
    A
      B
      C

Github Math

$JS(A,B) = \frac{|A \bigcap B|}{|A \bigcup B|}$

$JC(A,B) = \frac{|A \bigcap B|}{|A|}$

$OC(A,B) = \frac{|A \bigcap B|}{min(|A|,|B|)}$ AKA $JMC(A,B) = \frac{|A \bigcap B|}{min(|A|,|B|)}$

Resources:
https://docs.github.com/en/get-started/writing-on-github/working-with-advanced-formatting/writing-mathematical-expressions
https://en.wikibooks.org/wiki/LaTeX/Mathematics
https://developer.nvidia.com/blog/similarity-in-graphs-jaccard-versus-the-overlap-coefficient-2/