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About

Focused on bioinformatically deriving biomedical-relevant answers from public data in the population health field. I find some purpose in helping and mentoring others. Broadly, I aim to eloquently teaching topics that are esoteric and under-taught.

Current projects

  1. Discovery and re-discovery of genomic and metabolomic biomarkers in case verse control studies.
  2. Teaching inclusive, equitable, and sustainable practices in scholarly knowledge management

Github Statistics

My latest open-source contributions:

  1. 🗣 Commented on #3183 in sourmash-bio/sourmash
  2. 🗣 Commented on #3191 in sourmash-bio/sourmash
  3. 🗣 Commented on #3191 in sourmash-bio/sourmash
  4. ❗ Opened issue #3191 in sourmash-bio/sourmash
  5. 🗣 Commented on #3190 in sourmash-bio/sourmash
Colton's dynamically generated GitHub stats Colton's dynamically generated GitHub stats

Colton Baumler's Projects

analyzing-lit icon analyzing-lit

A quarto presentation on distilling scientific literature with Bibliometric analysis and R tools

cv icon cv

My Data Driven CV written with R, YAML, LaTeX, and Github Actions

managing-lit icon managing-lit

A quarto presentation on managing scientific literature with Zotero

msdial icon msdial

The tutorial for running MS-DIAL on Linux cluster

smk-breed icon smk-breed

An experimental approach to meta-program benchmark and resource sections in a snakemake workflow

sourmash icon sourmash

Quickly search, compare, and analyze genomic and metagenomic data sets.

spacegraphcats icon spacegraphcats

Indexing & querying large assembly graphs -- in space, no one can hear you miao!

vitae icon vitae

R Markdown Résumés and CVs

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