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View Code? Open in Web Editor NEWnda schema for MICrONS phase3
License: GNU General Public License v3.0
nda schema for MICrONS phase3
License: GNU General Public License v3.0
First, thanks a lot for making your datasets publicly available!
I had a brief look into the calcium imaging data set, and I have a very short and specific question: The data set includes the "raw fluorescence", as you write in the Readme:
nda.Fluorescence: Records the raw fluorescence traces for each segmented mask
However, there are also negative values, and the range of the traces seems to be closer to dF/F, rather than raw fluorescence values from the microscope. Could you clarify whether the nda.Fluorescence
is raw fluorescence or "raw" dF/F ?
Best wishes,
Peter
When I try to retrieve the pupil trace of the same session
and scan_idx
(even the same unit_id
but that shouldn't matter iiuc.) as I see in the notebook I get a vector filled with nan
s. Actually I didn't find any scan that had a non-nan pupil radius. What am I doing wrong?
When running the notebooks, on from phase3 import nda, func, utils
I am prompted to enter my DataJoint username and password. I have made an account and am able to log into it on the datajoint website.
However, when enter my username and password I get the error (2003, "Can't connect to MySQL server on 'localhost' ([Errno 111] Connection refused)")
.
I have tried logging in both with my username and my email many times. I have tried on a cluster with ssh port forwarding to my laptop (to view the notebook), as well as on my own laptop running ubuntu 22.02 .
What could be causing this?
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