blue-moon22 / resistomeanalysis

Resistome Analysis R Package

Resistome Analysis

Install dependencies in R:

• dplyr
• magrittr
• purrr
• reshape2
• ggplot2
• RColorBrewer
• grid
• vegan
• cluster
• ComplexHeatmap
• circlize
• ape
• DESeq2
• ggrepel
• stringr
• metafor

install.packages(c("dplyr", "magrittr", "purrr", "reshape2", "ggplot2", "RColorBrewer", "vegan", "cluster", "circlize", "ape", "ggrepel", "stringr", "metafor"))

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
    
BiocManager::install(c("DESeq2", "ComplexHeatmap"))

Install resistomeAnalysis package in R:

install.packages("devtools")
library(devtools)
install_github("blue-moon22/resistomeAnalysis")