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View Code? Open in Web Editor NEWThe PharmacoDI Python package contains all the functions needed to make the PharmacoDB database tables from a collection of .csv for each PSet.
License: MIT License
The PharmacoDI Python package contains all the functions needed to make the PharmacoDB database tables from a collection of .csv for each PSet.
License: MIT License
This is has been transferred from one of the items raised in PharmacoDB Issue 433.
Some of the compounds do not have raws in the compound_synonym table that should be present for example:
Phenylbutazone (49941, PRISM)
Pitavastatin (50069, PRISM)
Ac-AP (27734, NCI60)
Queries to the database with compound ids above do not return any raws.
@gangeshberi has discovered some duplicates in the target table:
name,count
"Tyrosine-protein kinase LCK",2
"Androgen Receptor",2
"Alpha-1a adrenergic receptor",2
"Alpha-2a adrenergic receptor",2
"Penicillin-binding protein 1b",2
and
id,name
481,"Alpha-1a adrenergic receptor"
1334,"Alpha-1A adrenergic receptor"
Discovered via:
select name, count(name) as count from target group by name having count > 1;
This should be corrected for the next database update.
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