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Home Page: http://ttic.uchicago.edu/~aakhan/BASIC/
BASIC: BCR and TCR assembly from single cell RNA-seq
Home Page: http://ttic.uchicago.edu/~aakhan/BASIC/
Hi, aakhan !
I am confused that whether BASIC can be used for TCR assembly?
Though there is '-i' to select type, it did not work when I use '-i TCR' for TCR assembly.
Here are my commands:
$ cat run.sh
/Personal/zhouxin/software/BASIC/BASIC.py -b /SGRNJ/Public/Software/conda_env/zhouxinT/bin/bowtie2 -SE /SGRNJ02/RandD4/zhouxin/test/TCR_assemble/20210203_HuG_TCR1225_2T/fq/479.fq -g human -i TCR
the error:
$ cat run.sh.o413832
Error: reads did not map to hv
Program terminated.
Can you help me to solve this problem?
Thank you !
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