Comments (4)
cbravo93
commented on July 19, 2024
Hi Rongxin!
You can find it at: http://scenic.aertslab.org/cisTopic/counts_Lake.Rds. Let me know if you need anything else.
Cheers!
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r3fang
commented on July 19, 2024
Thanks!! Do you think it is possible to also share the labels of the cells as shown in the manuscript?
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cbravo93
commented on July 19, 2024
You can find now the annotation dataframe at: http://scenic.aertslab.org/cisTopic/cellData_Lake.Rds .
Cheers!
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r3fang
commented on July 19, 2024
Thanks!!!!
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Related Issues (20)
- cistopic object to archR HOT 1
- maximal median size of population peaks HOT 1
- Question about createcisTopicObject HOT 1
- installation issue with ubuntu 20.04 HOT 3
- possibility to use BAM files from bulk ChIP HOT 1
- annotateRegions with own dataset HOT 1
- createcisTopicObject and genomic coordinates incompatibility error HOT 3
- input from fragments.tsv.gz? HOT 1
- Installation issue HOT 2
- Tutorial Dataset files HOT 1
- tSNE Clustering Thresholds HOT 1
- LDA run with Python and LogLikelihhod HOT 1
- How can I run cisTopic in R 4.0 HOT 2
- Ununsed Arguement error in cisTopic/TcisTarget HOT 1
- cisTopicObject <- selectModel(cisTopicObject) Error in .Call("rs_createGD") : C symbol name "rs_createGD" not in load table HOT 1
- Unused argument error while running topicsRcisTarget
- add cisTopic output to Seurat object? HOT 1
- Running Cistopic HOT 1
- Installation error "Failed to install 'unknown package' from Github: ..." HOT 1
- Loading Multiome data
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