Topic: gillespie-algorithm Goto Github
Some thing interesting about gillespie-algorithm
Some thing interesting about gillespie-algorithm
gillespie-algorithm,A free, open-source tool for modeling chemical reaction networks in Python
Organization: adicksonlab
gillespie-algorithm,Simplest simulation to use non-Exponential transitions
User: adolgert
gillespie-algorithm,Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations
User: augustinas1
Home Page: https://augustinas1.github.io/MomentClosure.jl/dev/
gillespie-algorithm,🌲 a flexible gene expression simulator with codon-specific translation rates
User: clauswilke
Home Page: http://pinetree.readthedocs.io
gillespie-algorithm,Scalable stochastic simulation of chemical networks
User: ctogle
gillespie-algorithm,Network approach to simulate epidemic infection in a bus - station system
User: danielfelipe-df
gillespie-algorithm,Documentation, models and code relating to the 3rd edition of the textbook Stochastic Modelling for Systems Biology
User: darrenjw
Home Page: https://darrenjw.github.io/work/smfsb/3e/
gillespie-algorithm,Models for Biochemical and Biophysical Research Communications manuscript
Organization: dlab
gillespie-algorithm,Delay Gillespie Degrade and Fire with variable delay
User: durs125
gillespie-algorithm,Shiny app simulating stochastic epidemics with Gillespie's direct method.
User: edbonneville
gillespie-algorithm,Numba accelerated implementation of Gillespie's algorithm for simulating stochastic processes
User: gdemaude
gillespie-algorithm,
User: j-lazo
gillespie-algorithm,Stochastic Simulator of Chemical Reactions
User: jacons
gillespie-algorithm,Computational modeling practical exercises.
User: juliorodrigues07
gillespie-algorithm,A Matlab library of numerical methods for solving differential equations stochastically and continuously .
User: keepfloyding
gillespie-algorithm,Stochastic implementation of a Lotka-Volterra competition model extended to multidimensional niche spaces (published in 10.1103/PhysRevE.91.052107)
User: lewlin
gillespie-algorithm,Implementation of Gillespie Stochastic Simulation Algorithm
User: lillux
gillespie-algorithm,Stochastic chemical kinetics using Gillespie algorithm and chemical master equation, application to enzyme kinetics
User: locuoco
gillespie-algorithm,Stochastic simulation of CRISPR nucleases cleaving a pool of DNA or RNA
User: louisreese
gillespie-algorithm,Implementation of TASEP with reinitiation and particles of arbitrary size.
User: marvinboe
gillespie-algorithm,Bayesian inference of stochastic cellular processes with and without memory in Python.
User: mauricelanghinrichs
gillespie-algorithm,Gillespie simulations of advantageous drivers & deleterious passengers in cancer
Organization: mirnylab
gillespie-algorithm,Working with Gillespie algorithm in order to exam Double step gene expression model.
User: mrsyuuki
gillespie-algorithm,This repository contains code for simulatuing 'miRNA-mediated negative feedback loop' model, given in the manuscript 'Effects of miRNA-mediated negative feedback on gene expression', using Gillespie algorithm
Organization: phybi
gillespie-algorithm,automatized generation of optimized Gillespie algorithm
User: qvhaelen
gillespie-algorithm,Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
Organization: sciml
Home Page: https://docs.sciml.ai/Catalyst/stable/
gillespie-algorithm,Finite State Projection algorithms for chemical reaction networks
Organization: sciml
gillespie-algorithm,Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichiometry matrices
Organization: sciml
Home Page: https://docs.sciml.ai/ReactionNetworkImporters/stable/
gillespie-algorithm,SBML differential equation and chemical reaction model (Gillespie simulations) for Julia's SciML ModelingToolkit
Organization: sciml
Home Page: https://docs.sciml.ai/SBMLToolkit/stable/
gillespie-algorithm,Code and reading materials related to my BIOL0044 MSci Investigative Project at the Lane Origins lab.
User: sedaradoykova
gillespie-algorithm,
User: sergiopachondotor
gillespie-algorithm,Efficient discrete random distribution for C++. The implementation uses array-based sum tree to allow fast sampling and updates of weighted events.
User: snsinfu
gillespie-algorithm,Fastest stochastic simulator in the West.
User: syedtaz
gillespie-algorithm,An mRNA reaction scheme simulator using the Doob-Gillespie algorithm in R
User: tommakesthings
Home Page: https://tommakesthings.github.io/Gillespie-mRNA-Simulator/
gillespie-algorithm,A new implementation of a well-known stochastic model for carcinogenesis, augmented with competition dynamics and spatial structuring.
User: tommasotarchi
gillespie-algorithm,Simulating and Optimising Dynamical Models in Python 3
User: twallema
gillespie-algorithm,Fortran implementation of the Krylov-FSP-SSA algorithm for solving the Chemical Master Equation.
User: voduchuy
gillespie-algorithm,A collection of some handy utilities
User: vsukhor
gillespie-algorithm,Simulate evolutionary biology models with Gillespie algorithm.
User: wangl-cc
gillespie-algorithm,Implementation of SIS epidemic model for large and heterogeneous networks using Fortran.
User: wcota
Home Page: https://doi.org/10.1016/j.cpc.2017.06.007
gillespie-algorithm,Networkx implementation of the SIS epidemic model for large and heterogeneous networks
User: wcota
Home Page: https://doi.org/10.1016/j.cpc.2017.06.007
gillespie-algorithm,Implementation of SIS epidemic model for large and heterogeneous networks
User: wcota
Home Page: https://doi.org/10.1016/j.cpc.2017.06.007
gillespie-algorithm,Code to simulate a stochastic system using the Gillespie algorithm with comparisons to the mean field model and steady state analysis.
User: wh607
gillespie-algorithm,DelaySSAToolkit.jl: a tool in Julia for stochastic simulation with delays
User: xiaomingfu2013
gillespie-algorithm,A simulation of the propagation of a virus using the Gillespie algorithm
User: yannlelorier
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