Topic: epidemiology Goto Github

👇 Here are 756 public repositories matching this topic...

algebraicjulia / algebraicpetri.jl
epidemiology,Build Petri net models compositionally
Organization: algebraicjulia
Home Page: https://algebraicjulia.github.io/AlgebraicPetri.jl/
chemistry epidemiology math petri

ankithans / covid-19-tracker
epidemiology,This is an Covid-19 tracker especially made for India
User: ankithans
covid-19 coronavirus-tracking flutter dart tracker api covid-19-india covid-api covid-data epidemiology

antonin-lfv / simulation_virus_covid-19
epidemiology,Simulating epidemics using Python
User: antonin-lfv
virus infectious-diseases diseases visualization python matplotlib subplots visualisation covid-19 simulation

benedekrozemberczki / spatiotemporal_datasets
epidemiology,Spatiotemporal datasets collected for network science, deep learning and general machine learning research.
User: benedekrozemberczki
deep-learning machine-learning gcn gnn time-series time-series-analysis analytics deepwalk node2vec spatial-analysis

biodynamo / biodynamo
epidemiology,BioDynaMo is a high-performance and modular, agent-based simulation platform.
Organization: biodynamo
simulation high-performance neuroscience modular-design agent-based agent-based-modelling agent-based-framework biology epidemiology cancer

broadinstitute / pyro-cov
epidemiology,Pyro models of SARS-CoV-2 variants
Organization: broadinstitute
sars-cov-2 genetics epidemiology

circuitscape / circuitscape.jl
epidemiology,Algorithms from circuit theory to predict connectivity in heterogeneous landscapes
Organization: circuitscape
Home Page: https://circuitscape.org
landscape-ecology julia-language sparse-linear-systems animal-movement landscape-genetics movement-ecology epidemiology forest-fire climate-change circuit-analysis

codeforphilly / chime
epidemiology,COVID-19 Hospital Impact Model for Epidemics
Organization: codeforphilly
Home Page: https://codeforphilly.github.io/chime/
code-for-philly epidemiology epidemics penn covid-19 code-for-america

connordonegan / geostan
epidemiology,Bayesian spatial analysis
User: connordonegan
Home Page: https://connordonegan.github.io/geostan
stan bayesian spatial epidemiology public-health r-package bayesian-inference rspatial r modeling

covid-19-electronic-health-system / corona-tracker
epidemiology,An easy-to-use PWA to monitor the user's wellness and learn about COVID-19.
Organization: covid-19-electronic-health-system
Home Page: https://coronatracker.me/
symptoms coronavirus covid-19 coronavirus-tracking react blockchain blockstack decentralized-applications health pandemic

covid19-model / simulator
epidemiology,Spatiotemporal epidemic model introduced in the context of COVID-19, ACM TSAS, 2022
Organization: covid19-model
Home Page: https://dl.acm.org/doi/abs/10.1145/3530774
epidemics covid-19 infection-hotspots hotspots epidemiology coronavirus coronavirus-analysis points-of-interest superspreaders superspreading-events

cssegisanddata / covid-19_unified-dataset
epidemiology,Unified COVID-19 Dataset
User: cssegisanddata
covid-19 sars-cov-2 coronavirus pandemic infectious-diseases global-health epidemiology hydrometeorology machine-learning

dataforscience / epidemiology101
epidemiology,Epidemic Modeling for Everyone
Organization: dataforscience
Home Page: https://medium.data4sci.com/
epidemiology covid-19 modeling python medium blog

dreji18 / bio-epidemiology-ner
epidemiology,Recognize bio-medical entities from a text corpus
User: dreji18
biomedical epidemiology ner nlp transformers

ecohealthalliance / epitator
epidemiology,EpiTator annotates epidemiological information in text documents. It is the natural language processing framework that powers GRITS and EIDR Connect.
Organization: ecohealthalliance
Home Page: https://epitator.readthedocs.io/en/latest/index.html
toponym-resolution geonames epidemiology nlp spacy disease-surveillance

ecojulia / ecosistem.jl
epidemiology,Julia package for ecosystem simulation
Organization: ecojulia
julia biodiversity epidemiology ecosystem-simulation ecology simulation

eebrown / data2019ncov
epidemiology,COVID-19 Pandemic Data R Package
User: eebrown
r coronavirus rpackage data epidemiology ncov ncov-2019 dataset covid-19 transcribed-data

epimodel / epimodel
epidemiology,Mathematical Modeling of Infectious Disease Dynamics
Organization: epimodel
Home Page: http://epimodel.org
epidemics agent-based-modeling network-graph epidemiology infectious-diseases

epinowcast / epinowcast
epidemiology,Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model with support for a range of reporting and generative processes.
Organization: epinowcast
Home Page: https://package.epinowcast.org/
nowcasting stan cmdstanr epidemiology outbreak-analysis pandemic-preparedness effective-reproduction-number-estimation infectious-disease-surveillance real-time-infectious-disease-modelling

genspectrum / cov-spectrum-website
epidemiology,A web platform to detect and analyze variants of SARS-CoV-2
Organization: genspectrum
Home Page: https://cov-spectrum.org
sars-cov-2 genomics research epidemiology covid-19 cov-spectrum

globaldothealth / list
epidemiology,Repository for Global.health: a data science initiative to enable rapid sharing of trusted and open public health data to advance the response to infectious diseases.
Organization: globaldothealth
covid19 epidemiology curation

idas-durham / june
epidemiology,June is a framework for agent based modelling in an epidemiological and geographical context.
Organization: idas-durham
epidemiology numerical-modelling

ifrcgo / cbs
epidemiology,Red Cross: Community-Based Surveillance
Organization: ifrcgo
Home Page: https://cbsrc.org/
non-profit community-project health-informatics redcross epidemiology surveillance

impulsogov / farolcovid
epidemiology,🚦🏥. Ferramenta de monitoramento do risco de colapso no sistema de saúde em municípios brasileiros com a Covid-19 • Monitoring tool & simulation of the risk of collapse in Brazilian municipalities' health system due to Covid-19
Organization: impulsogov
Home Page: https://farolcovid.coronacidades.org/
covid-19 data-science data streamlit epidemiology social-good statistics hacktoberfest

inphyt / covid19-italy-integrated-surveillance-data
epidemiology,COVID-19 integrated surveillance data provided by the Italian Institute of Health and processed via UnrollingAverages.jl to deconvolve the weekly moving averages.
Organization: inphyt
Home Page: https://covid19.infn.it/iss/
data database data-structures data-visualization epidemiology epidemiological-data time-series time-series-analysis surveillance surveillance-data

institutefordiseasemodeling / covasim
epidemiology,COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions
Organization: institutefordiseasemodeling
Home Page: https://covasim.org
abm agent-based contact-tracing coronavirus covid covid-19 epidemiology model npi simulation stochastic

institutefordiseasemodeling / emod
epidemiology,Source files for building the IDM EMOD disease transmission model.
Organization: institutefordiseasemodeling
epidemiology hiv idm malaria modeling stochastic

jisungk / riddle
epidemiology,Race and ethnicity Imputation from Disease history with Deep LEarning
User: jisungk
Home Page: https://riddle.ai
deep-learning machine-learning neural-networks imputation epidemiology computational-biology bioinformatics biology

jstockwin / epiestimapp
epidemiology,Source code for the EpiEstim app.
User: jstockwin
Home Page: https://github.com/jstockwin/EpiEstimApp/wiki
r epidemiology epidemics transmission modelling disease disease-spread

kendrickorg / kendrick
epidemiology,Domain-Specific Modeling for Epidemiology
Organization: kendrickorg
epidemiology mathematical-modelling infectious-diseases pharo smalltalk dsl model-driven-engineering pharo-smalltalk

lindbrook / cholera
epidemiology,R Package for Analyzing John Snow's 1854 Cholera Map
User: lindbrook
r cholera john-snow public-health epidemiology data-visualization datasets voronoi triangulation-delaunay voronoi-polygons

lisphilar / covid19-sir
epidemiology,CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.
User: lisphilar
Home Page: https://lisphilar.github.io/covid19-sir/
covid19 epidemiology python covid covid-19 coronavirus epidemic-simulations epidemic-model data-science analysis

metalcorebear / covid-agent-based-model
epidemiology,Disease propagation ABM generating SIR, severe cases, and R0 over quasi-time.
User: metalcorebear
agent-based-modeling agent-based-simulation epidemiology epidemics covid-19 mesa covid project-mesa

msberends / amr
epidemiology,Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.
User: msberends
Home Page: https://msberends.github.io/AMR/
amr antimicrobial-data epidemiology microbiology r software

ngs-fzb / mtbseq_source
epidemiology,MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
Organization: ngs-fzb
epidemiology genomics mycobacterium-tuberculosis ngs phylogeny pipeline tuberculosis variants

pzivich / python-for-epidemiologists
epidemiology,Tutorial in Python targeted at Epidemiologists. Will discuss the basics of analysis in Python 3
User: pzivich
causal-inference epidemiology python tutorial

pzivich / zepid
epidemiology,Epidemiology analysis package
User: pzivich
Home Page: http://zepid.readthedocs.org
epidemiology inverse-probability-weights risk-ratio epidemiology-analysis risk-difference g-formula ipw aipw g-computation tmle

r4epi / sitrep
epidemiology,Report templates and helper functions for applied epidemiology
Organization: r4epi
Home Page: https://r4epi.github.io/sitrep/
r-package report-generator epidemiology outbreaks msf

reichlab / flusight
epidemiology,Influenza forecasts visualizer
Organization: reichlab
Home Page: http://reichlab.io/flusight/
forecasting epidemiology statistics prediction visualizer influenza

ryansmcgee / seirsplus
epidemiology,Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
User: ryansmcgee
epidemiology epidemiology-analysis epidemic-model epidemic-simulations epidemics covid-19 covid sars-cov-2 coronavirus

seandavi / sars2pack
epidemiology,An R package with over 50 highly cited, read-to-use, up-to-date COVID-19 pandemic data resources
User: seandavi
Home Page: https://seandavi.github.io/sars2pack/
rstats-package rstats data-science datascience data-visualization covid-19 datasets coronavirus coronavirus-tracking biomedical-data epidemiology epidemics geospatial public-health

simonrharris / ska
epidemiology,Split Kmer Analysis
User: simonrharris
genomics epidemiology bacterial-genomes

soroushchehresa / awesome-coronavirus
epidemiology,🦠 Huge collection of useful projects and resources for COVID-19 (2019 novel Coronavirus)
User: soroushchehresa
Home Page: https://corona.js.org
awesome awesome-list coronavirus corona coronavirus-info awesome-corona awesome-coronavirus covid-19 2019-ncov covid19

spiros / chronological-map-phenotypes
epidemiology,Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.
User: spiros
electronic-health-record phenotype icd-10 read-code epidemiology health-informatics

starschema / covid-19-data
epidemiology,Unpivoted and cleaned data sets on the COVID-19 pandemic
Organization: starschema
Home Page: https://starschema.github.io/COVID-19-data
covid-19 coronavirus epidemiology virology publichealth

stewid / siminf
epidemiology,A framework for data-driven stochastic disease spread simulations
User: stewid
high-performance-computing r markov-chain epidemiology data-driven cran mathematical-modelling

thoughtworks / epirust
epidemiology,An agent-based epidemiology simulation framework built in Rust
Organization: thoughtworks
epidemiology agent-based-modeling agent-based-simulation rust

tirthajyoti / covid-19-analysis
epidemiology,Analysis with Covid-19 data
User: tirthajyoti
data-science covid-19 coronavirus analytics python visualization epidemiology numpy modeling object-oriented-programming

worldhealthorganization / app
epidemiology,COVID-19 App
Organization: worldhealthorganization
flutter dart firebase appengine-java epidemiology covid-19 coronavirus

wxwx1993 / pm_covid
epidemiology,Public Available Code and Data to Reproduce Analyses in "Air pollution and COVID-19 mortality in the United States: Strengths and limitations of an ecological regression analysis."
User: wxwx1993
Home Page: https://projects.iq.harvard.edu/covid-pm
covid-19 epidemiology air-pollution mortality