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Jeff Zheng's Projects

deeplearning icon deeplearning

Here is some of the work I have done throughout my Deep Learning research at St Francis Xavier University

deepmod icon deepmod

DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications

deepseq icon deepseq

Code for paper titled, "Beyond Homology Transfer: Deep Learning for Automated Annotation of Proteins". Preprint available at: http://www.biorxiv.org/content/early/2017/07/25/168120

deepvariant icon deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

defiant icon defiant

Differential methylation: Easy, Fast, Identification and ANnoTation

delly icon delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

diffreps icon diffreps

Differential analysis for ChIP-seq with biological replicates

dispy icon dispy

Distributed and Parallel Computing Framework with / for Python

divis icon divis

integrated and customisable pipeline of cancer genome sequencing analysis

dkfz_dockered_workflows icon dkfz_dockered_workflows

This is the container that houses the Roddy-based component provided by DKFZ for the DEWrapper workflow

dl-cnv icon dl-cnv

Convolutional network for detection of CNV

dmrfinder icon dmrfinder

Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data

dnabert icon dnabert

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

docker-builds icon docker-builds

:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics

docs icon docs

Documentation of the Snakemake-Workflows project

dotfiles icon dotfiles

paul's shell, git, etc config files. also homebrew, migration setup. good stuff.

dplyr icon dplyr

dplyr: A grammar of data manipulation

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