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bioconda-recipes

Conda recipes for the bioconda channel.

biqr

bisulfite sequence analysis

biscuiteer

tools for analysing Biscuit (https://github.com/zwdzwd/biscuit/wiki/Align-bisulfite-converted-reads) output

blog

dzlab-tools

Mirror of Daniel Zilberman Lab's bioinformatics tools

gdc_dna_methylation_qc

htslib

C library for high-throughput sequencing data formats

illuminaio

🔬 R package: This is the Bioconductor devel version of the illuminaio package.

infiniumarrayannotation

Collection of Infinium Array Annotation

klib

A standalone and lightweight C library

libsamtools0119

The old samtools code forked from samtools repo

miser

convenience package for loading IDATs off of GEO (short for "sesamizer")

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

multiqc_testdata

Test data for MultiQC. See https://github.com/ewels/MultiQC

pemmer

Create complex plots in Python

pmd2017analysis

quickunmap

Get unmapped reads quickly

r-source

Read-only mirror of R source code from https://svn.r-project.org/R/, updated hourly. See the build instructions on the wiki page.

rnbeads

Git working Repo synced to the Bioconductor: http://bioconductor.org/packages/devel/bioc/html/RnBeads.html

sesame

🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips

sesame_docker

build docker image for sesame

sesamedata

Supporting data for SeSAMe package

sesamize

sesamize a minfi ratioSet or RGSet

sgsl

A lightweight subset of GNU scientific library

termdown

Countdown timer and stopwatch in your terminal

testcode

transvar

TransVar - multiway annotator for precision medicine

utils

some utility C code

wheatmap

Complex Layout of Grid Graphics Made Simple

workhorse

Core set of scripts to run Sesame pipeline workflow