Zewen Kelvin Tuong's Projects
mgatk: mitochondrial genome analysis toolkit
Python implementation of Milo for differential abundance testing on KNN graph
R package implementation of Milo for testing for differential abundance in KNN graphs
A library for the Immune Repertoire Classification Problem
netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
nextNEOpi: a comprehensive pipeline for computational neoantigen prediction
Visualization Package for NetworkX
A pure Python implementation of a circle packing algorithm
Single cell trajectory detection
The Composer of ggplots
Hyper fast Levenshtein distance library for Python
Python-based API-Wrapper to access Scopus
Circular visualization in Python (Circos Plot, Chord Diagram)
Data parsing and validation using Python type hints
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
Python implementation of the Slingshot pseudotime algorithm
Misc utilities for receptor gene sequences
Single-Cell Analysis in Python. Scales to >1M cells.
single cell Flux Estimation Analysis (scFEA) Try the below web server!
Functions for single cell data analysis
Count HLA alleles in single-cell RNA-seq data
A scanpy extension to analyse single-cell TCR and BCR data.
Scissor package
https://www.sc-best-practices.org
flexible CDR based distance metrics
just a simple repo to hold workflows to check if R can be installed properly
just to hold some notebooks as i troubleshoot palantir