zizhao-wang / bio-compression

This repository is created for Compressed genomic data and searching !

Processing-of-genomic-data

This repository is created for Compressed genomic data and searching.Created by Clion, used C++!

Introduction

This project is a spcial and beautiful idea proposed by prof. JingYing Wang and Zizhao Wang.

Method

1. we used a special invert index and Memory storage technology, a Cache-like technology;
2. We proposed a beautiful method that can compressed DNA data;
3. We proposed a algorithm that can accurately and quickly search the string including similarity search.

Algorithm

Install

If you want to install our program,you can download this code and open it in your Clion 2020.3.

Version environment

1.IDE version: Clion 2020.3

2.Runtime version: 11.0.9.1+11-b1145.63 amd64

3.VM: OpenJDK 64-Bit Server VM by JetBrains s.r.o.

4.Windows : 10 10.0

5.GC: ParNew, ConcurrentMarkSweep

6.Memory : 1987M

7.Cores: 12

use it in your computer

Download it and open it!

License

This is a free software. See the file LICENSE for the full text.