zindy / iocbio Goto Github PK
View Code? Open in Web Editor NEWAutomatically exported from code.google.com/p/iocbio
License: Other
Automatically exported from code.google.com/p/iocbio
License: Other
To do
1. Time unit uniform, doesn't write minute after number
2. Eventnames into the fourth column not at the end with different units
3. Put different time and rate axises for different channels
Mervi Strath
Original issue reported on code.google.com by [email protected]
on 8 Oct 2010 at 1:03
Exception in runner process:
------------------------------------------------------------
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/iocbio/optparse_gui.py", line 153, in __call__
self.func(*args, **kw)
File "/usr/local/bin/iocbio.convert", line 117, in runner
ImageStack(new_images, stack.pathinfo, options=options).save(output_path)
File "/usr/local/lib/python2.7/dist-packages/iocbio/io/image_stack.py", line 178, in save
io.save_image_stack(self, path, indices=indices, options=self.options)
File "/usr/local/lib/python2.7/dist-packages/iocbio/io/io.py", line 447, in save_image_stack
image_stack.pathinfo.save(pathinfo_txt)
File "/usr/local/lib/python2.7/dist-packages/iocbio/io/pathinfo.py", line 487, in save
rotation_angle = self.get_rotation_angle()
File "/usr/local/lib/python2.7/dist-packages/iocbio/io/pathinfo.py", line 1084, in get_rotation_angle
self.set_rotation_angle(self.pathinfo.get_rotation_angle())
File "/usr/local/lib/python2.7/dist-packages/iocbio/io/pathinfo.py", line 426, in set_rotation_angle
assert isinstance (rotation_angle, (float, int)),`rotation_angle`
AssertionError: None
What steps will reproduce the problem?
1.
2.
3.
What is the expected output? What do you see instead?
What version of the product are you using? On what operating system?
Please provide any additional information below.
Original issue reported on code.google.com by [email protected]
on 25 Jan 2012 at 9:27
What steps will reproduce the problem?
1. Open image stack captured with iocbio microscope software:
from iocbio.io import load_image_stack
full_images, full_pathinfo = load_image_stack('configuration.txt')
2. Get voxel sizes from pathinfo object:
voxel_sizes = full_pathinfo.get_voxel_sizes()
3. Observe that these voxel sizes are in m when the configuration.txt
clearly specifies that the units are in um.
What is the expected output? What do you see instead?
Units in m, but should retain the original um.
What version of the product are you using? On what operating system?
Latest svn version on ubuntu AMD64.
Please provide any additional information below.
This method should at least specify what the unit of the voxel size is in any
of a number of ways:
1). Change to get_voxel_size_m
2). Add another method get_voxel_unit
3). Return the unit along with the value in get_voxel_size
Note: set_voxel_size should also support a unit keyword then.
Original issue reported on code.google.com by [email protected]
on 18 Jun 2010 at 6:41
Testing
Original issue reported on code.google.com by pearu.peterson
on 12 Feb 2010 at 12:21
The attached patch allows to build iocbio on Windows with Microsoft Visual
Studio 2008.
Original issue reported on code.google.com by [email protected]
on 3 Jun 2010 at 2:13
Attachments:
What steps will reproduce the problem?
1.
doing 'import iocbio.ops'
What is the expected output? What do you see instead?
causes segmentation fault
What version of the product are you using? On what operating system?
ubuntu 10.10 64bit with epd 2.7.2 64bit (python 2.7.2, numpy 1.6.1 ...)
install iocbio-1.2.2 from source
Please provide any additional information below.
It seems to do with the order of importing the regress_ext extension and the
numpy/scipy packages. If numpy/scipy are imported first then a segmentation
fault happens. If the regress_ext is imported first then there is no
segmentation fault. I got a clue for this from the following link (though I am
not sure it is the same issue):
http://code.google.com/p/healpy/issues/detail?id=58
Original issue reported on code.google.com by [email protected]
on 30 Jan 2012 at 1:59
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.