zhumengyan Goto Github PK

aitl2023

code for our publication

analysis-salt-responsive

Analysis of 16S sequencing data for paper "Salt-responsive gut commensal modulates TH17 axis and disease"

annotationdatabase

annotation database for human genetics, genomics and epigenomics

atac-seq_related

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bioinfo_tasks

储存一些平时写的小脚本及帮助文件

bioinformatics-resources

A curated list of resources for learning bioinformatics.

cnmf

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

cnv-pepline

list softwares and papers about copy number variation

datawarehouse

DataSource

gggenes

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

hannigan_crcvirome_mbio_2018

Investigating the gut virus communities associated with colon cancer.

hcc2023

code for HCC analysis

hello-world

first program in github

honeybadger

HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data

immuneresistance

This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources of T cell exclusion linked to immunotherapy clinical outcomes".

interesting_papers

interesting papers

msigdf

Molecular Signatures Database (MSigDB) in a data frame

my_spiders

myblog

my blog using rblogdown

nanopore_related

nanopore sequencing

novobreak_src

pyscenic

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

r4ds

R for data science

r_plot

ggplot2图形绘制学习模仿

rplot_ggplot

store some R scripts and corresponding data, mainly using ggplot

scfea

single cell Flux Estimation Analysis (scFEA)

scrat

Sing Cell R Analysis Toolkit

scrna.seq.course

Analysis of single cell RNA-seq data course

seacells

SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data