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HyperAttentionDTI: improving drug–protein interaction prediction by sequence-based deep learning with attention mechanism. This repository contains the source code and the data.

Python 100.00%

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hpyerattentiondti's Issues

The code can not be stopped

Dear author,
The code runs for a period of time and displays "[165/200] ..." Then I observe that it becomes "[33/200] ..."
The script seems to run circularly and will not stop.
At present, I have been running for 4 days. It seems that it can't stop by itself. I want to know what went wrong. Please let me know! thank you!!!

Thank and best regards

I don't understand the Attention block size

Hi, I appreciate your nice work!

I'm confused with model shape.

image

Captured from your paper.

image

Captured from your model.py

Since you told that f size is the number of filters of the last 1D-CNN layer,
in here, f should be self.conv * 4

Then, I think Wa size should be f x f, not 2f x f
Am I misunderstand it? or just typo?

sincerely,

Early stopping not work

Hello, I am very interested in your work.

In HyperAttentionDTI, there is early stopping code in 'pytorchtools.py' and also use in 'HyperAttentionDTI_main.py'.
But when I run the code, it doesn't stop when over the early stopping counter.
I would like to know the option for early stopping.

Thank you

image

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