zealseeker / janssenproject

Bender Group collaboration using Janssen cellular morphology data and LINCS gene expression data to understand and predict mechanisms of compound toxicity

JanssenProject

Bender Group collaboration using Janssen cellular morphology data and LINCS gene expression data to understand and predict mechanisms of compound toxicity.

TO DO:

• Add relevant papers
• Add .gitignore so data does not get uploaded
• Upload current code

Please create your own branch and submit a pull request, any modifications to code can then be merged with the main branch after code review by other collaborators. https://dont-be-afraid-to-commit.readthedocs.io/en/latest/git/commandlinegit.html

Requirements

ChEMBL Structure Pipeline is required to standarise the molecules

conda install -c chembl chembl_structure_pipeline