Comments (1)
dominikburri
commented on August 20, 2024
Hi Sam,
Glad you are interested and want to try it.
So far we didn't test it with reads processed by STARsolo, but I would think that it works.
SCINPAS requires the CB and UR tags, so the corrected cell and UMI barcodes. It works on soft-clipped reads, so those need to be available.
Given that CellRanger uses STAR for the mapping, I'm rather confident that reads mapped with STARsolo work too.
Give it a shot and let us know if you run into issues.
Best,
Dominik
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