Analysis scripts and relative data used in the paper "Single-cell profiling reveals the trajectory of FOLR2-expressing tumor-associated macrophages to regulatory T cells in the progression of lung adenocarcinoma".
Rdata and table files used in the analysis. GZ file should be ungziped before analysis.
TCGA LUAD dataset used to test the association of the AT2 and AT1 signatures with patients overall survival.
####valid_nat_commun.myeloid.R Kim's scRNA dataset (Nat Commun. 2020 PMID: 32385277) used to validate the immune-axis of myeloid cell subsets in the LUAD progression.
Kim's scRNA dataset (Nat Commun. 2020 PMID: 32385277) used to validate the immune-axis of Tcell cell subsets in the LUAD progression.