Comments (2)
Sure, if you'd like to do this, let'd do it in the BAM record writer. The SAM record writer can be used as reference:
noodles/noodles-bam/src/writer/sam_record.rs
Lines 101 to 124 in b4124cf
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Looking at the specification there's another constraint that is enforced by the current version of samtools
:
Sum of lengths of the M/I/S/=/X operations shall equal the length of SEQ.
It's probably best to also require this.
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Related Issues (20)
- Unexpected EOF on BCF File HOT 2
- `sam::header::programs` module is private HOT 1
- How to set tag with value in noodles::bam? HOT 2
- Missing newlines in `header::record::write_other` when writing collections HOT 1
- Reading entries of file into preallocated buffer HOT 3
- Add Async GFF Reader and/or expose lazy record from string? HOT 2
- `gff::AsyncReader` gated by async feature HOT 2
- BCF and VCF `record_bufs` return different `RecordBuf`s HOT 2
- IUPAC codes in VCF REF field HOT 1
- Can support flush method on writer ? HOT 3
- BED name column limit HOT 1
- bgzf/async/reader: Add seeking to an uncompressed position
- How to write custom bam records HOT 1
- Help request: using the noodles async FASTQ writer with async compression without corrupting the output HOT 1
- QualityScore conversion from fastq HOT 2
- Create test SAM data HOT 2
- Performance question
- Explicitly state the indexing of alignment start and end HOT 1
- Trait bounds changes in noodles_sam 0.62.0 HOT 1
- sam/alignment/record/sequence: Add a method signature to return a single base at a given index HOT 2
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