Comments (2)
Note that &[u8]
implements BufRead
, so you can define a test helper that uses Reader::read_record
(or Reader::read_record_buf
) to build single records, e.g.,
fn build_record(src: &[u8]) -> io::Result<sam::Record> {
let mut reader = sam::io::Reader::new(src);
let mut record = sam::Record::default();
reader.read_record(&mut record)?;
Ok(record)
}
#[test]
fn test_some_function() -> io::Result<()> {
let record = build_record(b"qry\t0\tchr\t1\t60\t5M\t*\t0\t0\tGCAGT\t!!!!!\tNM:i:1\t2T2")?;
// ...
Ok(())
}
We can consider adding a convenience conversion for sam::Record
, given it's a format record specific to SAM; however, sam::alignment::RecordBuf
is agnostic to serialized forms.
from noodles.
Wonderful! Boy would I love to do some paired programming with you. This library is so elegant it is beyond my comprehension.
A convenience conversion would be sensational, but not urgent given your function above allows me to write lots of test records now.
from noodles.
Related Issues (20)
- Unexpected EOF on BCF File HOT 2
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- Reading entries of file into preallocated buffer HOT 3
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- Help request: using the noodles async FASTQ writer with async compression without corrupting the output HOT 1
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- Performance question
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- Trait bounds changes in noodles_sam 0.62.0 HOT 1
- sam/alignment/record/sequence: Add a method signature to return a single base at a given index HOT 2
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from noodles.