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rnaseqscripts

rpharma-demo

saige

sailfish

Rapid Mapping-based Isoform Quantification from RNA-Seq Reads

salmon

Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments

seekin

SEEKIN: SEquence-based Estimation of KINship

sentiment

sentiment is an R package with tools for sentiment analysis including bayesian classifiers for positivity/negativity and emotion classification.

seqtk

Toolkit for processing sequences in FASTA/Q formats

shiny

Easy interactive web applications with R

smartr

SmartR

snprelate

R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development Version)

solvebio-python

SolveBio Python bindings

somatic_pipeline

肿瘤体细胞突变检测流程（组织、cfDNA均可，需要有对照）

sscm

Semi-Supervised Clustering of Mutations

strelka

Somatic and germline small variant caller for mapped sequencing data

text-mining-recommendation-system

Text Mining Code in R and Matlab to build a recommendation system

text-mining-weak-signals

This is a collection of mostly R code to use text mining to analyse conference abstracts, blogs and other sources in an attempt to look for "weak signals" (early signs of new trends), See the wiki pages for background etc.

text2vec

:exclamation: This is a read-only mirror of the CRAN R package repository. text2vec — Modern Text Mining Framework for R. Homepage: http://text2vec.org Report bugs for this package: https://github.com/dselivanov/text2vec/issues

text_mining_with_r

A collection of scripts for teaching and learning basic text mining methods in R

textmininginr

Sample text mining procedures in R

tidy-text-mining

Manuscript of the book "Tidy Text Mining with R" by Julia Silge and David Robinson

tidytext

Text mining using dplyr, ggplot2, and other tidy tools :sparkles::page_facing_up::sparkles::page_facing_up::sparkles:

tokenizers

Collection of tokenizers for R

topmed_freeze3_calling

TOPMed Freeze 3 variant calling pipeline

uk_biobank_gwas

Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release

variantkey

64 bit Encoding for Human Genetic Variants

wes-wgs

Pipelines and tools for WES and WGS data processing

wes_pipeline

wes study

wgbs-cfdna

Scripts for the alignment and analysis of whole genome bisulfite sequencing data from cell-free DNA

wordvectors

An R package for creating and exploring word2vec and other word embedding models