yzharold,github

actigraphy

Feature extraction from minute level actigraphy data

awesome-deep-learning

A curated list of awesome Deep Learning tutorials, projects and communities.

awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bigpint

Analysis and scripts for Google Summer of Code project.

biobankread

Python for UK Biobank data analysis

blockchain-stuff

Blockchain and Crytocurrency Resources

bonsai

Bonsai: Ultrafast, flexible taxonomic analysis and classification

cc-linear-mixed-models

Introduction to linear mixed models

cdhots

Construct and decompose higher order tensorian statistics

cfdna

Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA

cfdnapattern

Pattern Recognition for Cell-free DNA

cmdetect

ctDNA mutation detection workflow

ctdna-pipeline

A simplified pipeline for ctDNA sequencing data analysis

ctdna_papers

papers collections of cancer detected from plasma

ctdna_wes_pipeline

Pipeline for analysing data from whole-exome sequencing (WES) of circulating tumour DNA (ctDNA)

ctdnasomaticvariantcall.jl

Somatic Variant Call for ctDNA

ctrl

Conditional Transformer Language Model for Controllable Generation

data-algorithms-book

MapReduce, Spark, Java, and Scala for Data Algorithms Book

deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

deeplearning

深度学习入门教程&&优秀文章&&Deep Learning Tutorial

deeplearning-biology

A list of deep learning implementations in biology

deeplearningbook

MIT Deep Learning Book in PDF format

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

deepvariant-glnexus-wdl

WDL workflow for population variant calling using htsget, DeepVariant, and GLnexus

dream_analysis

Simulation and data analysis code for dream paper

dxda

CLI tool to manage the download of large quantities of files from DNAnexus

essay-grading

This project was completely based on NLP and text mining. I used R to find many features from text data and train model on them using ML.

evident

Elucidating sampling effort for microbial analysis studies

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