yogionbioinformatics / computational-drug-discovery-internship-at-merck

Description of work done at Merck pharmaceutical company in the summer of 2018 as a Computational Drug Discovery Intern at West Point, PA. Information excludes all proprietary information belonging to Merck & Co.

Hi 👋, I'm Yogindra Raghav (YogiOnBioinformatics)

Bioinformatics/Computational Biology Researcher at MIT and the Broad Institute of MIT and Harvard!

⚡ CAPTAIN. LEADER. ASPIRING SCIENTIST/AUTHOR. PHILOSOPHER. ⚡

• 💬 Ask me about:

Computational Genomics	Computational Proteomics
Computational Drug Discovery	Web Frontend Development
Data Science	Data Engineering
Data Maintenance	Containerization
Mentorship	Working with Scientists & Consortiums
High-Performance Computing (HPC) Systems	Cloud Computing
Bioinformatics Pipeline Creation/Maintenance	Free & Open-Source Software (FOSS)

• 📫 How to reach me: [email protected]

Platforms/Operating Systems

Linux

Google Cloud

Microsoft Azure

Chrome OS

Microsoft Windows

Languages

Python	R	Bash	Java	C++
HTML	CSS	JavaScript	YAML	Markdown

Technologies/Tools

Git	GitHub	GitLab	Jupyter/JupyterLab	Visual Studio Code
Flask	Django	NumPy	SciPy	Pandas
Docker	Singularity	WDL	Terra	Cromwell
Blender	Globus	Tmux	Jekyll	Matplotlib
SLURM

Bioinformatics Databases

NCBI GEO	KEGG	International Human Epigenome Consortium	1000 Genomes	RefSeq
dbSNP	ClinVar	XenBase	antiSmash	Protein Data Bank
UniProt	PubChem	PDBbind	BindingDB	DrugBank

Bioinformatics Tools

NCBI BLAST	UCSC Genome Browser	cutadapt	HISAT2	Bowtie2
Stringtie	featureCounts	DESeq2	samtools	bedtools
NCBI SRATools	MACS	MEME-ChIP	HOMER	IDR
deepTools	Bioconductor	EMBOSS	MEGAX	SWISS-MODEL
FTMap	NAMD	VMD	g:Profiler

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