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Analysis codes for "A set-theoretic definition of cell types with an algebraic structure on gene regulatory networks and application in annotation of RNA-seq data"
barcodes.tsv.gz
/features.tsv.gz
/matrix.mtx.gz
, Seurat doesn't recognize themxxx.barcodes.tsv.gz
and yyy.barcodes.tsv.gz
, we have to move them to /xxx/barcodes.tsv.gz
and /yyy/barcodes.tsv.gz
respectivelym1_10x
and GSE165288
).mtx
files and barcodes.tsv
filesm1_10x
) in R studiom1_10x
is super massive data and the resource of memory is limited for R studio, I need to convert file format to .npz
to compressnumpy
in R studionumpy
Dockerfile
or Makefile
to assure reproductivityError response from daemon: failed to create shim: OCI runtime create failed: container_linux.go:380: starting container process caused: exec: "start.sh": executable file not found in $PATH: unknown
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