yichel518 / zhang2019nbt

Scripts for stat and plot figures in rice microbiome paper

Zhang2019NBT

Scripts for statistics and plotting figures in "NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice", published in Nature Biotechnology 2019.

• /data # metadata, OTU table and taxonomy files
• /fig1-6 # raw data, Rmarkdown scripts and output HTML format results
• figX/figX.Rmd # X is number 1-6, including the reproducable R scripts for each panel in figure
• figX/figX.html # Readability report by R markdown, include annotations, scripts and figures
• script/ # General R scripts used in this study

If you used these scripts, please cited the paper below:

Jingying Zhang#, Yong-Xin Liu#, Na Zhang#, Bin Hu#, Tao Jin#, ..., Chengcai Chu*, Yang Bai*. NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice. 2019. Nature Biotechnology.