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module2_r_biostats

Training module of the Bioinformatics Community of Practice on R and biostatistics

montecarlo

An R package for simulation studies.

mrcc

Mendelian Randomization for Case-Control Study

my-writing-workflow

Tutorial for converting markdown files in to APA-formatted docs, based on my workflow.

mysimtools

Tools for conducting simulation studies in R

niccageviz

nlp-rladies-bergen

This repository contains material on NLP (prepared for a talk for R-Ladies Bergen)

notebooks

numerical-linear-algebra

Free online textbook of Jupyter notebooks for fast.ai Computational Linear Algebra course

obsidian-alfred

Alfred workflow for Obsidian note-taking app. Open vaults and files in Obsidian.

onlinestats.jl

Single-pass algorithms for statistics

osacc

Ordered Subset Analysis for Case-Control Studies

ov_prognosis_prediction

Assessing the clinical utility of multi-omics data for predicting serous ovarian cancer prognosis

pandas-profiling

Create HTML profiling reports from pandas DataFrame objects

paper-code

Bayesiany Repository containing the R-code used in analyses for publications.

parallelr-biostat-2015

Materials for presentation on parallel R to the UC Berkeley biostatistics graduate students

parsnip

A tidy unified interface to models

patient-care

Analysed a datset of 131 randomly selected diabetic patients between the ages of 35-55 to build a logistic regression model to predict quality of medical care received (Poor or Good i.e 0 or 1) using R.

patientlevelprediction

An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

peopleanalytics-regression-book

Handbook of Regression Modeling in People Analytics

perceptilabs

PerceptiLabs main repository

performance

:muscle: Models' quality and performance metrics (R2, ICC, LOO, AIC, BF, ...)

phd_planning_template

Outline for planning PhD projects

pingouin

Statistical package in Python based on Pandas

plaidml

PlaidML is a framework for making deep learning work everywhere.

plotnine

A grammar of graphics for Python

poweranalysis-onlinebehavior

Example Code for Conducing Power Analyses of Online Behavior using DeclareDesign

prediction-of-early-readmission-of-inpatients-analysis-of-69-970-clinical-patient-records

prediction-prostate-surveillance

Joint modeling of latent prostate cancer state and observed clinical outcomes, for active surveillance of low risk prostate cancer

prediction_models_vs_clinicians

Code for the "Comparison of emergency department trauma triage performance of clinicians and clinical prediction models: a cohort study in India" study