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followers: 103.0 following: 295.0 repos: 59.0 gists: 0.0

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xiongxu's Projects

learning-markdown

Markdown guidance and reference(Markdown 入门参考)

libbigwig

A C library for handling bigWig files

mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

networkd3

D3 JavaScript Network Graphs from R

nipter

R Package for Non Invasive Prenatal Testing (NIPT) analysis

nodejs-token-auth

Token-Auth is a Token based authentication system. It generates token and stores them in redis with user informations. It verifies provided token from HTTP Header (Authorization) in order to allow access to protected end point api.

opendht

A C++11 Distributed Hash Table implementation

presentations

Bring Your Own Bioinformatics

redisaligner

NGS 36-mer perfect match sequecing aligner based on redis

resequencing-workflows

Makefile based workflows for processing resequencing data through to bam and vcf files

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

rnaseqvis

RNAseq Visualization tools written by Perl

rosalind

Solutions to Rosalind Bioinformatics Problems

s3fs

Automatically exported from code.google.com/p/s3fs

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

sdsl-lite

Succinct Data Structure Library 3.0 (unstable, prerelease)

seqmule

Automated human exome/genome variants detection from FASTQ files

single_file_libs

List of single-file C/C++ libraries.

starter-nodejs-rest

Starter for a Node.js REST Application using MongoDB and JSON Web Token

tadtool

TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.

tracy

Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

unicall

A wrapper for calling small variants from human germline high-coverage single-sample Illumina data

upb

small, fast parsers for the 21st century

vcf2vaf

calculate variant allele frequency from vcf file

wechat

weixin/wechat/微信公众平台/微信企业号/微信商户平台/微信支付 go/golang sdk

wiggleplotr

A small R package to make sequencing read coverage plots in R.

windows_batch_dsrc

Automatically fastq(.gz) (de)compression on windows

windowsngsapp

pre-compiled windows NGS app

xiongxu.github.io

Panda's blog

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