xiekunwhy / kmerdedup Goto Github PK
View Code? Open in Web Editor NEWReduce genome assembly redundancy using shared mapped k-mer method.
License: GNU General Public License v3.0
Reduce genome assembly redundancy using shared mapped k-mer method.
License: GNU General Public License v3.0
Hi all,
One key step of kmerDedup is to calculate shared reads number between pairwise contigs, if you know some tools can do this from a bam file very fast, please tell me, it may speed up kmerDedup.
Best,
Kun
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