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Run12 pp 200 GeV Npe Analyis 

How to run the data analysis code
 Work area (PDSF) 
/global/u1/x/xiao00/work/run12 
STAR library
SL12d

In /global/u1/x/xiao00/work/run12

1 Code under StRoot
(1) StPicoDstMaker/ PicoDst see http://rnc.lbl.gov/~xdong/SoftHadron/picoDst.html 
(2) StDmesonMaker/ Read Pico to save  analysis tree for the charm analyis, saved  the hadron and electron candidate. 
(3) StNpeMaker/ Read DmesonTree make the Npe analysis 
(4) macros/ macros to run the main program
(5) StTriggerUtilities/ Trigger simulator
(6) StEmbeddingAnaMaker   Read embedding save the embedding analyis tree
(7) StEmbeddingAna Read embedding tree and make the embedding analysis  

2. How to run the code make test sampe  and sumbit the job   

(1) Run test sample (PDSF)
    cd /global/u1/x/xiao00/work/run12 
    starver SL12d
    ./cons.sh
    ./run_Npe.test.csh

(2) Sumbit jobs (PDSF)
cd /global/project/projectdirs/star/pwg/starhf/Xiaozhi/Run12_pp/Data
./clear.sh
star-submit  submit.xml
The jobs will take  2-3 hours, after jobs finishde( qstat -u xiao00 | wc) 
cd /global/project/projectdirs/star/pwg/starhf/Xiaozhi/Run12_pp/Data/production
hadd hist.root *.root (hist.root saved all the histogram)


3. Read embedding and analysis embedding

The request information can be found at https://drupal.star.bnl.gov/STAR/starsimrequest by request ID.
EMC triggerd embedding  work area:  /global/project/projectdirs/star/pwg/starhf/Xiaozhi/Run12_pp/embedding/Embedding_HT

(1)Single electron and positron (Request ID 20140404)
   cd Single_Electron
   starver SL12d_embed
   ./cons.sh
   star-submit submit.xml

(2) Gamma conversion (ID 20140405)
    cd Gamma
    starver SL12d_embed
    ./cons.sh
    star-submit submit.xml

(3)Pi0 Dalitz decay (Request ID 20143501)
   cd Pi0_dalitz
   starver SL12d_embed
   ./cons.sh
   star-submit submit.xml

(4)Eta Dalitz decay (Request ID 20143501)
   cd Eta_dalitz
   starver SL12d_embed
   ./cons.sh
   star-submit submit.xml

Minbias triggerd embedding  work area:  /global/project/projectdirs/star/pwg/starhf/Xiaozhi/Run12_pp/embedding/Embedding_MB
(5)Single electron and positron
  cd Single_Electron
     starver SL12d_embed
     ./cons.sh
    star-submit submit.xml

(6) Gamma conversion (ID )20144303
  cd Gamma
  starver SL12d_embed
  ./cons.sh
 star-submit submit.xml

Minbias triggerd  Pi0 and Eta dalitz sample produced on RCF,  embedding work area: /star/u/xiao00/Run12/work/Npe/Run12_pp_data01/embedding/Embedding_MB
(7)Pi0 Dalitz decay (ID 20144304) 
   cd Pi0_dalitz
   starver SL12d_embed
   ./cons.sh
   star-submit submit.xml

(8)Eta Dalitz decay (ID 20144305)
   cd Eta_dalitz
   starver SL12d_embed
   ./cons.sh
   star-submit submit.xml

4. Trigger efficiency extract from embedding
cd /global/homes/x/xiao00/work/run12
./cons.sh
./run_Trigger_efficiency.sh
Embedding/Trigger_efficiency.root Macros/NPE_HT/Trigger_efficiency/
cd Macros/NPE_HT/Trigger_efficiency/
root -l -l -b -q TrgEfficiency.C++

4. Tracking efficiency extract from embedding
cd /global/homes/x/xiao00/work/run12
./cons.sh
./run_Tracking_eff.sh 
Embedding/Tracking_eff_HT.root  Macros/NPE_HT/Trigger_efficiency/
cd Macros/NPE_HT/Trigger_efficiency/
root -l -l -b -q Tracking_efficiency.C++

5. Photonic electron reconstruction efficiency

cd /global/homes/x/xiao00/work/run12	
./cons.sh				
./run_PHE_re.sh 			
cp Embedding/Gamma_HT.root(Pi0_dalitz_HT.root,Eta_dalitz_HT.root)    Macros/NPE_HT/Photonic_RE_efficiency/
cd Macros/NPE_HT/Photonic_RE_efficiency/		
root -l -l -b -q Photonic_RE_relative_contribution.C++
root -l -l -b -q Photonic_RE_efficiency.C++

6. nsigma Electron calibration
cd /global/homes/x/xiao00/work/run12/Macros/NPE_HT/nSigmaE_Calibration
root -l -b -q nSigma_Electron_Calibration_primary.C++

7. Inclusive electron purity
cp ../nSigmaE_Calibration/nSigmaE_calibration_primary.root .
root -l -b -q  purity.C++

8. dEdx cut efficiency
/global/homes/x/xiao00/work/run12/Macros/NPE_HT/dEdxCut_efficiency
 root -l -b -q nSigma_Electron_CutEfficiency_primary.C++
 root -l -b -q nSigma_Electron_Cut_efficiency.C++

9. BEMC cuts efficiency
   root -l -b -q BEMC_efficiency.C++

10. Events counting
cd /global/homes/x/xiao00/work/run12/Macros/NPE_HT/Event
root -l -b -q Draw_Data_Event.C++

11. Extract Npe cross section

cd /global/homes/x/xiao00/work/run12/Macros/NPE_HT/Cross_Section

cp /global/homes/x/xiao00/work/run12/Macros/NPE_HT/dEdxCut_efficiency/BEMC_efficiency.root  Input/
cp /global/homes/x/xiao00/work/run12/Macros/NPE_HT/Tracking_efficiency/Tracking_efficiency_HT.root  Input/
cp /global/homes/x/xiao00/work/run12/Macros/NPE_HT/Trigger_efficiency/TrigEfficiency_HT.root  Input/
cp /global/homes/x/xiao00/work/run12/Macros/NPE_HT/Photonic_RE_efficiency/Photonic_re_Efficiency.root   Input/
cp /global/homes/x/xiao00/work/run12/Macros/NPE_HT/Purity/purity_HT.root  Input/
cp /global/homes/x/xiao00/work/run12/Macros/NPE_HT/Purity/purity_HT.root  Input/
cp ../RootFile/Root_File_4_13/hist_4_13.root Input/

root -l -b -q NPE_Cross_section.C++

12. Draw result
cd /global/homes/x/xiao00/work/run12/Macros/NPE_HT/Draw_Result
cp ../Cross_Section/run12_Npe_HT.root .
root -l Draw_run12_Npe.C++


Selected  Slides for meeting

Non-photonic electron production in p+p collisions at √s=200 GeV.
Xiaozhi Bai for STAR collaboration oral presentation to APS 2015 April Meeting, Baltimore, MD (2015/4)
https://www.star.bnl.gov/protected/heavy/xiao00/Run12/QM2015/QM2015_v8_3.pdf

Measurements of Open Heavy Flavor Production in Semi-leptonic Channels in p+p, U+U and Au+Au collisions at STAR.
Xiaozhi Bai for STAR collaboration oral presentation to Quark Matter 2015, Kobe,Japan.
https://www.star.bnl.gov/protected/heavy/xiao00/Run12/PPt/APS_xiaozhi_v8.pdf

https://www.star.bnl.gov/protected/heavy/xiao00/Run12/PPt/Run12_NPE_review_HT.pdf
https://www.star.bnl.gov/protected/heavy/xiao00/Run12/PPt/Run12_NPE_review_MB.pdf

PWG discussion:
(1) https://www.star.bnl.gov/protected/heavy/xiao00/Run12/PPt/PWG_1.pdf
(2) https://www.star.bnl.gov/protected/heavy/xiao00/Run12/PPt/PWG_2.pdf
(3) https://www.star.bnl.gov/protected/heavy/xiao00/Run12/PPt/PWG_3.pdf
(4) https://www.star.bnl.gov/protected/heavy/xiao00/Run12/PPt/PWG_4_15.pdf
(5) https://www.star.bnl.gov/protected/heavy/xiao00/Run12/PPt/PWG-5.pdf
(6) https://www.star.bnl.gov/protected/heavy/xiao00/Run12/PPt/PWG-5.pdf
(7) https://www.star.bnl.gov/protected/heavy/xiao00/Run12/PPt/PWG_7.pdf
(8) https://www.star.bnl.gov/protected/heavy/xiao00/Run12/PPt/PWG_8_27.pdf
（9） https://www.star.bnl.gov/protected/heavy/xiao00/Run12/PPt/PWG_9_4.pdf
（10） https://www.star.bnl.gov/protected/heavy/xiao00/Run12/PPt/Collaborantion_Meeting_update.pdf
（11）https://www.star.bnl.gov/protected/heavy/xiao00/Run12/PPt/Collaboration_meeting_bnl.pdf
（12）https://www.star.bnl.gov/protected/heavy/xiao00/Run12/PPt/VPD_MB_preliminary_Result.pdf