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xiaochengcike's Projects

food-segmentation icon food-segmentation

This is a project that segmented foods in photographs via an active contour algorithm

fpga_based_cnn icon fpga_based_cnn

FPGA based acceleration of Convolutional Neural Networks. The project is developed by Verilog for Altera DE5 Net platform.

frangi3d icon frangi3d

Computes vesselness scores for 3-dimensional images.

fu-net icon fu-net

FU-net: Multi-class Image Segmentation using Feedback Weighted U-net

fundus-vessel-segmentation-tbme icon fundus-vessel-segmentation-tbme

In this work, we present an extensive description and evaluation of our method for blood vessel segmentation in fundus images based on a discriminatively trained, fully connected conditional random field model. Standard segmentation priors such as a Potts model or total variation usually fail when dealing with thin and elongated structures. We overcome this difficulty by using a conditional random field model with more expressive potentials, taking advantage of recent results enabling inference of fully connected models almost in real-time. Parameters of the method are learned automatically using a structured output support vector machine, a supervised technique widely used for structured prediction in a number of machine learning applications. Our method, trained with state of the art features, is evaluated both quantitatively and qualitatively on four publicly available data sets: DRIVE, STARE, CHASEDB1 and HRF. Additionally, a quantitative comparison with respect to other strategies is included. The experimental results show that this approach outperforms other techniques when evaluated in terms of sensitivity, F1-score, G-mean and Matthews correlation coefficient. Additionally, it was observed that the fully connected model is able to better distinguish the desired structures than the local neighborhood based approach. Results suggest that this method is suitable for the task of segmenting elongated structures, a feature that can be exploited to contribute with other medical and biological applications.

fvsr-net icon fvsr-net

Paper"FVSR-Net: An End-to-end Finger Vein Image Scattering Removal Network"

ganseg icon ganseg

Framework for medical image segmentation using deep neural networks

gat icon gat

Graph Attention Networks (https://arxiv.org/abs/1710.10903)

gbm-robustradiomics icon gbm-robustradiomics

Code accompanying the paper "Radiomics for glioblastoma survival analysis in pre-operative MRI: exploring feature robustness, class boundaries, and machine learning techniques"

gcn icon gcn

Implementation of Graph Convolutional Networks in TensorFlow

generalizedmedseg icon generalizedmedseg

Recent progress on domain adaption/generalization for medical image segmentation

gfemr icon gfemr

Gaussian Field Estimator with Manifold Regularization for Retinal Image Registration

glsepf icon glsepf

Code for a novel active contour model guided by global and local signed energy-based pressure force

gmseg icon gmseg

Spinal cord gray matter segmentation using deep dilated convolutions.

gnnpapers icon gnnpapers

Must-read papers on graph neural networks (GNN)

gpvesseltracking icon gpvesseltracking

Tracking and diameter estimation (segmentation) of retinal vessels using Gaussian process and Radon transform

grabcut-graphcut icon grabcut-graphcut

Matlab implementation of GrabCut and GraphCut for interactive image segmentation

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