Comments (8)
Someone else had a similar problem before, cf issue #86, and it had happened because the files output by ClonalFrameML had been modified before calling the R script. Could you please confirm that you are trying to run the R script on exactly the same files that were output by ClonalFrameML?
from clonalframeml.
Yes, I do not think I have modified these files.
from clonalframeml.
This error happens on the line that is meant to display the recombination events. I'm wondering if maybe this is happening because ClonalFrameML did not find any recombination event at all. Could you please check how many lines you have in your output file with suffix .importation_status.txt ?
from clonalframeml.
It has 7164 lines
from clonalframeml.
Ok, so that's not the problem.
If you would like to send me your files by email I will see if I can reproduce and understand the problem.
from clonalframeml.
please! What email address should I send them to?
from clonalframeml.
Cf http://xavierdidelot.github.io/contact.html
from clonalframeml.
Solved - the ClonalFrameML output files had been edited.
from clonalframeml.
Related Issues (20)
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