Comments (4)
GoogleCodeExporter
commented on July 20, 2024
I'll handle this one.
Original comment by [email protected] on 23 Jan 2015 at 4:05
- Changed state: Accepted
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GoogleCodeExporter
commented on July 20, 2024
XMFA files can now be used via the option "-xmfa_file true"
Original comment by [email protected] on 23 Jan 2015 at 4:08
- Changed state: Fixed
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BioinformaticaUSFQ
commented on July 20, 2024
I have the same problem, the same error comand when I tried to run ClonalFrameML, What can i do?
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xavierdidelot
commented on July 20, 2024
Could you please check you are using the "-xmfa_file true" option?
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Related Issues (20)
- Is it better to order genes by the reference genome for a xmfa file ??? HOT 2
- std::bad_alloc problem HOT 1
- Are there any detailed description of the output pdf from cfml_results.R? HOT 1
- ERROR: Token: ((( Found left bracket but no right bracket HOT 1
- High recombination sequence detection HOT 3
- Inquiry on difference of Recombination Visualization between cfml_results.R and Phandango HOT 1
- R script plot colours are not explained HOT 3
- Can I use SNP multiple sequence alignment matrix and a tree build based on it as inputs? HOT 5
- contructed a new whole genome alignment HOT 1
- Fix R/theta, 1/delta and Nu
- Script cfml_results.R not found HOT 4
- Some genomes not displaying on tree HOT 6
- how to create the msa file for fragmented genomes HOT 1
- nonrecombinant alignment output empty HOT 1
- What do you mean I don't understand the output file HOT 1
- ERROR: convert_NewickTree_to_marginal_tree(): Newick tree tip label was not expected HOT 2
- option -fasta_file_list true? HOT 1
- Segmentation fault after reading tree HOT 2
- N/A on posterior means on the per branch model HOT 2
- Correlate positions between input alignment/graphical output HOT 1
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