workflow4metabolomics / w4mrutils

Set of utilitqry functions to help W4M to create tools and their wrappers

W4MRUtils

W4MRUtils is a R packages provided by W4M to ease galaxy tools writing. It contains some utility functions

Installation

You can install the development version of W4MRUtils like so:

$ git clone https://github.com/workflow4metabolomics/W4MRUtils
$ cd W4MRUtils

then

$ make install

or

> rmarkdown::render("README.Rmd")
> devtools::document(".")
> roxygen2::roxygenize(".")
> devtools::test(".")
> devtools::install(".", dependencies = FALSE, repos = NULL, type = "source")

or

$ R -q -e "install.packages('W4MRUtils', repos='https://cran.irsn.fr');"

Uninstallation

You can uninstall the version of W4MRUtils you installed with:

$ make remove_package

or

> remove.packages("W4MRUtils")

XML Wrapper

Please follow the guidelines during the redaction of the xml wrapper.

Read the doc in case of problems.

w4mrutils's Issues

Doc redaction

Write vignettes for:

• arguments parsing
• dataframe-related operations
• RCheck Library
• logging
• galaxy helpers