Comments (6)
From xcms.group 2.1.0 and xcms.fillpeaks 2.1.0
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docker run -d -p 8080:80 quay.io/workflow4metabolomics/galaxy-workflow4metabolomics:beta
from tools-metabolomics.
Available within the dev galaxy instance
from tools-metabolomics.
Tested on dev galaxy instance!
Options work well. It is ok for me.
Funny note: the "_x" used in original ID when same ID is also added to the namecustom column. I do not know if it is a good or bad thing yet (ensure unique names in all cases, but useless most of the time), so I would recommend to leave it this way for the moment, and see later whether changes are needed depending on user feedback.
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- validated by @melpetera
- validated by @yguitton
- validated by @jfrancoismartin
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Validated
Many thanks
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Related Issues (20)
- readMSData error HOT 8
- suite_xcms not up to date
- xcms_chrom_plot missing color in group plot HOT 2
- Tools with picture issues in help section
- [xcms process history] error HOT 3
- findChromPeaks Merger with "bad " samplenames format auto correction HOT 1
- Please wrap the XCMS refineChromPeaks tool HOT 15
- AdjustRtime module : bug in wrapper
- camera_combinexsannos for EU Server installation
- Error when linking Isocor and Isoplot in a workflow HOT 8
- Metabolite correlation analysis - handling differences in order between tables
- xcmsSet - old version (rev: 15646e937936) - conda version resolving never finishes HOT 5
- xcms plot chromatogram - manage SampleMetadata with ad without X (check.names)
- Tool request: MZMine HOT 10
- fillPeaks function enhancement ChromPeakAreaParam
- test issue HOT 1
- metams: exchange MSP reader with MSBackendMSP from RforMassSpectrometry HOT 1
- Biocontainer not letting tool create subdirectory HOT 3
- Add DIMet tool in workflow4metabolomics
- Added tool Skyline2Isocor not being integrated onto W4M galaxy UI HOT 2
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