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16s-rdna-v3-v4

16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools

awesome-multi-omics

List of software packages for multi-omics analysis

bacteria-archaea-traits

A synthesis of bacterial and archaeal phenotypic trait data

bibliometrix

An R-tool for comprehensive science mapping analysis. A package for quantitative research in scientometrics and bibliometrics.

chinaadmindivisonshp

**行政区划矢量图，ESRI Shapefile格式，共四级：国家、省/直辖市、市、区/县。关键字：**行政区划图；**地图；**行政区；**行政区地图；行政区地图；行政区；行政区划；地图；矢量数据；矢量地理数据；省级；直辖市；市级；区/县级；行政区划图。

coastal_sand_microbiota

R Codes for the analysis of 16S rDNA amplicon sequence data from the coastal sands

doing-meta-analysis-in-r

All R codes for the guide "Doing Meta-Analysis in R"

ecmarker

envigcms

GC/LC-MS data analysis for environmental science

fieldimager

FIELDimageR: A R package to analyze orthomosaic images from agricultural field trials. This package is a compilation of functions to analyze pos-mosaicking images from research fields, and allows to: crop the image; remove soil effect; build vegetation indices; rotate the image; build the plot shapefile; extract information for each plot; and evaluate stand count, canopy percentage, and plant height.

fubc_1_to_9_2022

Standardizes fertilizer use by crop (FUBC) survey data and performs validation of results as per Ludemann et al (2022) Scientific Data article

functionalmodules

Code pertaining to the project 'Deconstructing the Soil Microbiome into Reduced-Complexity Functional Modules'

gfs3000import

R package to import files generated by the WALZ GFS3000 photosynthesis system

ggcor-1

ggcor备用源，版权归houyunhuang所有，本源仅供应急使用

ggcorrr

The 'ggcorrr' package can be used to visualize easily a correlation matrix using 'ggplot2'. It supports all the functions in the corrplot package.

ggmantel

A simple tools to visualize mantel test.

gpwas

Genome-Phenome Wide Association Study

grabseqs

A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA

intror

这是一本中文 R 语言入门书，基于最新 tidyverse 包。

locator

deep learning prediction of geographic location from individual genome sequences

maize_phenotype_map

Image Data Processing for Maize Phenotype Map

mbgwas_wounds

The collection of scripts and data coming from Tipton et al. 2020 study of patient genetic effects on wound microbiomes and healing.

melonnpan

Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles

metafor

A meta-analysis package for R

metaplma

Metabolite Peak List Merge & Annotation Tool: A platform independent R tool to merge and annotate metabolite-peak data from GC/MS runs

micasense_preprocessing

Batch processing pipeline for radiometric calibration of multispectral images captured by RedEdge imager

microbiome_trait_succession

Trait-based community assembly and succession of the infant gut microbiome

microbiomemarker

R package for microbiome biomarker discovery

microeco

An R package for data analysis in microbial community ecology

millennial

This is a repository for the newly developed Millennial model