Get the database error "groot get -d arg-annot" about groot

[will-rowe]

Thanks for filing the issue! This is a bug which was fixed in a previous version (caused by a dependency changing their API). You've found this because I forgot to update the GROOT version number in the tutorial!

I will update the tutorial to use the following cmd for the conda env:

conda create -n grootTutorial -c bioconda parallel sra-tools==2.8 fastqc==0.11.7 bbmap==37.90 multiqc groot==0.8.5 seqkit==0.7.2 samtools==1.4 metacherchant==0.1.0

[lancetxiao]

Thanks for your help.

[will-rowe]

No worries! Have merged the changes into the master branch now, so you should be set!