groot-db output issues about groot

[LeonardosMageiros]

To add one additional thing I noticed: in one of my output files I have the following entry:
groot-db_CARD__gb|NC_000913.3|-|484425-485619|ARO:3004043|Escherichia 26 1194 460M9D719M6D

which in card corresponds to that gene:
https://card.mcmaster.ca/ontology/41090

Notice that in the end of the first column only the word Escherichia appears instead of Escherichia coli acrA

Maybe that is something else that needs to be fixed?

Best
Leonardos

[will-rowe]

Hi Leonardos

This is great feedback - thank you! As you have spotted, I did no curation when I merged those databases. This would definitely be something to re-visit. The databases in general could do with a bit of TLC.

I will endeavour to get around to this asap, but things are pretty busy for me at the moment so no promises on when I'll be able to do this by!

By the way and in case you didn't see it, a new version of groot is in conda as of yesterday - this version is much more efficient than previous versions so I recommend updating to it if you haven't already