Pyani not installing through conda about pyani

[widdowquinn]

Thanks for the report, Conor - this is an outstanding issue re: the landing page documentation. Many apologies that it's (still) not yet fixed and/or clear.

conda installs pyani v0.2; the pyani <command> syntax is new to pyani v0.3/development. For the conda-installed version, you'll need to follow this documentation: https://github.com/widdowquinn/pyani/blob/master/README_v_0_2_x.md

I hope that helps get things moving.

Cheers,

L.

[conmeehan]

Hi,

Yes that clears it up a bit. That means that to use pyani the conda doesn't work at all? I have to install from source?

C

[widdowquinn]

Sadly, yes. The average_nucleotide_identity.py script runs with the conda installation, but the pyani <XXXX> form does not.

[conmeehan]

Ok no worries, I can work with that. Thanks!

C