Comments (2)
The current README has this table of contents:
Table of Contents
pyani
@widdowquinn From the conversation the other day, and the outline in the wiki, I think these sections of the README should be reduced/moved elsewhere:
The non-standard installation details could go into the wiki.
This might go into too much detail for the README, especially if it should eventually also detail SLURM stuff.
(This one maybe needs to stay; it depends a bit on the default version of pyani
for the repo, I think.)
This section seems like it should either come earlier in the README, or be in the wiki:
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See also the CONTRIBUTING.md
convention encouraged by GitHub which would hold or at least point to developer centric information like coding style, CI setup, issue management.
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Related Issues (20)
- Untested code in `fastani.py` HOT 1
- pyani: command not found HOT 1
- Use of `unittest.TestCase` assertion methods provides more informative error messages than `assert` HOT 1
- pyani command not found HOT 1
- `pyani` command not found HOT 1
- Cannot run anim in pyani 0.3.0-alpha using provided data, on macosx 12.6, nucmer fails. HOT 4
- Error "Cannot update because the update target is missing these hooks" when trying to use autoupdate on my repo HOT 1
- sending some love for this script: " genbank_get_genomes_by_taxon.py" HOT 2
- ERROR: This has possibly been a NUCmer run failure, please investigate ERROR: NoneType: None HOT 3
- Type strain vs X of genomes HOT 1
- ValueError in pyani plot using pyani 0.3.0-alpha
- Pyani not installing through conda HOT 5
- Inquiry on Analysis Duration with ANIb and ANIm for Streptomyces Genomes HOT 4
- Fix alignment coverage >1.0 and aniM symmetrical behaviour HOT 8
- Add separate columns for subject and query alignment lengths in `--run_results` HOT 23
- numpy: No module named 'version' HOT 4
- add `pyani dnadiff` subcommand HOT 5
- Running --graphics after analysis HOT 1
- ZeroDivisionError: float division by zero HOT 3
- Installation issues HOT 3
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