Comments (1)
@KirstieJane, this is the GraphBundle's behavior we have right now and I hope @Islast will confirm my below-mentioned explanations.
So, in general, it is a feature 😃
GraphBundle
is a dictionary, where value - is the BrainNetwork Graph and key - is the name of the graph. Right now methods like calculate_nodal_measures
&& report_nodal_measures
for this class GraphBundle
are not implemented. That's why there are errors saying that these operations (methods) on GraphBundle do not exist.
And to be clear bundleGraphs['real_graph'].calculate_nodal_measures() works as expected too
This works as expected because we take one BrainNetwork Graph (keyed by the name - real_graph]) from a bunch of Graphs (GraphBundle) and perform nodal measures calculation only on this one Graph.
bundleGraphs['real_graph'] returns the BrainNetwork Graph, as this is a single BrainNetwork object we can calculate_nodal_measures()
.
In your case these 2 lines calculate nodal measures on the same object G10 :
bundleGraphs['real_graph'].calculate_nodal_measures()
G10.calculate_nodal_measures()
Speaking about calculate_global_measures()
, we have report_global_measures
that will calculate global measures (if not already calculated) and report the results as a pandas dataframe.
PS. adding the support of calculate_nodal_measures
for GraphBundle is pretty straightforward (pseudocode):
for each graph in GraphBundle:
measures = graph.calculate_nodal_measures()
store the reported nodal measures of each graph in a dataframe
return dataframe
We can discuss this in details during the next week's meeting if you want to have this functionality ;)
from scona.
Related Issues (20)
- Add padding to the colorbar at the bottom HOT 3
- Pad random graphs with 0s so they are in the right order HOT 4
- Set seed for Erdos Renyi graph in plot degree distribution HOT 4
- Include small world in plot_network_measures HOT 3
- Which version of nilearn do we need? HOT 1
- Cut covars columns from residuals matrix HOT 1
- feature request: tell brainbundle the total number of brains you want
- Catch error if name of graph doesn't exist in brain bundle for plot_rich_club HOT 4
- Adjust legend of plot_rich_club HOT 3
- small_world calculations HOT 1
- Nodal measures for plotting with nilearn HOT 5
- Plots of brains in plotting anatomical network HOT 2
- View Connectome with nilearn HOT 5
- Error with nilearn.plot_connectome HOT 1
- Test for visualisations HOT 1
- Removing old viz modules
- View_corr_mat() - make new || leave old HOT 5
- Make new get_anatomical_layouts() function HOT 1
- Two similar tutorials HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from scona.