Add padding to the colorbar at the bottom about scona

[wingedRuslan]

create subplot for the brain plotting

fig, ax = plt.subplots(figsize=(9,12))

# And then loop through each node and add it in order
for node in node_order:
    aaa = nx.draw_networkx_nodes(H,                                  # A networkx graph
                            pos=pos,                           # A dict with nodes as keys and positions as values.
                            node_color=colors_list[node],       # color for each node
                            nodelist=[node],                   # Draw only this one node
                            ax=ax)

nx.draw_networkx_edges(G2,   # plotting for thresholded edges G2
                        pos=pos,
                        edgelist=edge_list_G2,
                        edge_color = "lightgrey",
                        ax=ax)

add subplot - basically adds an Axes to the figure as part of a subplot arrangement.

ax2 = fig.add_subplot(15, 1, 15, xticklabels=[], yticklabels=[])

vmin = min(nodal_measures[measure].values)
vmax = max(nodal_measures[measure].values)
norm = mpl.colors.Normalize(vmin=vmin, vmax=vmax)

# ticks = [round(vmin,2), round((vmin+vmax)/2,2), round(vmax,2)]
ticks = [vmin, (vmin+vmax)/2, vmax]

cb = mpl.colorbar.ColorbarBase(ax2, cmap="hot_r",
                                norm=norm,
                                ticks=ticks,
                                format='%.2f',
                                orientation='horizontal')

cb.set_label(measure, size=20)
ax2.tick_params(labelsize=20)

plt.tight_layout()

plt.subplots_adjust(top=1)

sns.despine(top=True, right=True, left=True, bottom=True)

fig.savefig("CCC", bbox_inches=0, dpi=100)

[KirstieJane]

Try adding a grid. Subplots are really hard to adjust and control if you go outside of what they’re designed to do (which is have multiple similar sized plots).

[KirstieJane]

Here’s some code on setting up a grid rather than a subplot:

scona/scona/scripts/make_figures.py

Line 1890 in 1e70f46

grid = gridspec.GridSpec(4, 1)