weng-lab Goto Github PK

pileup.js

Interactive in-browser track viewer

platform-python-lsf-api

psychencode_chipseq_pipeline

psychip_snakemake

rampage-analysis

read-npy-file

Read npy files in javascript

rnaseq-bamtosignal-task

signal generation task for RNA-seq workflow

rnaseq-kallisto-task

kallisto task for RNA-seq workflow

rnaseq-rsem-task

RSEM task for RNA-seq workflow

rnaseq-star-task

STAR task for RNA-seq workflow

rnaseq-workflow

RNA-seq pipeline, based on the ENCODE uniform processing pipeline

roadmap_state_calls

Use existing Roadmap Epigenomics chromatin state calls to call chromatin states on third-party data.

scratch

screen

signal-extraction-task

A simple task for extracting signal surrounding a given set of regions from a BigWig file into a JSON matrix.

signal-service

Service for signal and peak data

signal-umap-task

Task for performing UMAP on signal matrices

slurm-drmaa

DRMAA for Slurm imported from PSNC SVN

snoplowpy

stamdnasetrackhub

stateregexp

extract genomic regions from segmentation using regular expression

temp2

Algorithm to detect germline and de novo transposon insertions

template_cpp

C++11/14 Template

tomtom-task

Task for running TOMTOM to match discovered motifs against existing databases

twobit

Reader / Writer for UCSC 2-bit Genome Format

umitools

A toolset for handling sequencing data with unique molecular identifiers (UMIs)

ushuffle

ushuffle wrapper

viper

Variant interpretation pipeline and resource

weng-lab.github.io

wiggletools

Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency