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ggbiplot

A biplot based on ggplot2

ggfortify

Define fortify and autoplot functions to allow ggplot2 to handle some popular R packages.

ggfreehand

Add freehand circles to ggplot2 graphs

ggtech

ggplot2 tech themes, scales, and geoms

ggthemes

ggplot themes and scales

ggthemr

Themes for ggplot2.

gwas_vitamind_african_ancestry

Code for the "Genome-wide association study (GWAS) and functional analysis of genetic variants associated with circulating vitamin D binding protein in African Americans

he_johnston_nbt_2014

Analysis code for our ChIP-nexus Nature Biotechnology manuscript

ihw_slides

Group meeting presentation about IHW

labs

Scripts for HarvardX courses: PH525x

mbasic

Matrix Based Analysis for State-space Inference and Clustering

microbiome-pipeline

A pipeline for processing 16S / ITS data

microbiome.onglab

A wrapper for dada2

mixtools

:exclamation: This is a read-only mirror of the CRAN R package repository. mixtools — Tools for Analyzing Finite Mixture Models

mmmisc

My Library of R Helpers

mosaics

MOdel-based one and two Sample Analysis and Inference for ChIP-Seq

msr

Multiscale representation of genomic signals

mtheme

A modern LaTeX Beamer theme

peaks-report

A quick report to make a plot & table of the number of peaks per BED file in a dir

pipelines

NGS Pipelines rewritten with RUFFUS!

plotroc

Interactive ROC plots with ggplot + d3.js.

polymode

Object oriented framework for multiple emacs modes based on indirect buffers

probabilistic-programming-and-bayesian-methods-for-hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

profile_slides

qvalue

rdbio-scripts

Unorganized collection of bioinformatics scripts and utilities

reading

A collection of papers and books that Storey Lab members should read and others may find useful

readr

Read flat files (csv, tsv, fwf) into R

recursive_elimination_by_sensitivity_testing

This repo provides a novel feature selection algorithm called Recursive Feature Elimination by Sensitivity Testing.

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