wckdouglas Goto Github PK

100days

100 days of algorithms

aln-img

Powering image-based deep learning for bam-alignment (genomics)

apollo-academic

atropos

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

bamsurgeon

tools for adding mutations to existing .bam files, used for testing mutation callers

bcl2fq-stats

bcl2fq-stats is designed to give a quick overview of read count distribution over the given indices, and identify potential index mismatches from the undetermined read counts.

bedfiletools

bedpetobed

bedtools2

A powerful toolset for genome arithmetic.

bio-tools

cfna

colorblindr

correctmulticount

This package contains only one function correctCounts as to assign multiply-mapped-reads to the most abundant gene that it mapped to.

cosmos2

Python Scientific Pipeline Management System

covid19_md

My dashboard for zip code level analysis of COVID19 cases in Maryland

cv

data-science-ipython-notebooks

Continually updated data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.

deep_cfna

Using deep learning to classify fragments from TGIRT-seq libraries of cell-free nucleic acids

diffexpr

Porting DESeq2 into python via rpy2

diploid-contam

dmisc

douglas's python package for some miscellaneous functions

dnabarcoding

A program to generate sets of sample/cell barcodes

dotfiles-rs

This is a simple dot files manager for syncing dot files across machines.

doublemutfit2ddg

edgepy

A Python implementation of edgeR for differential expression analysis

emojicam

personal project to render webcam data directly as emoji 😃

empirical-bayes-book

Introduction to Empirical Bayes: Examples from Baseball Statistics

fastq-tools

fastqe

FASTQ sequence quality visualisation with Emoji

fdrcontrol

R-package for FDR control with Rcpp